Hi Michael, Thanks so much for the help! Output is below.
Best, Mike In [2]: mvpa.wtf() /Library/Frameworks/EPD64.framework/Versions/7.1/lib/python2.7/site-packages/nose/util.py:14: DeprecationWarning: The compiler package is deprecated and removed in Python 3.x. from compiler.consts import CO_GENERATOR Out[2]: Current date: 2011-10-11 10:10 PyMVPA: Version: 0.6.0~rc3 Hash: fd0f2809300cc25e81ee21a3a876d00d524402c1 Path: /Library/Frameworks/EPD64.framework/Versions/7.1/lib/python2.7/site-packages/mvpa/__init__.pyc Version control (GIT): GIT information could not be obtained due "/Library/Frameworks/EPD64.framework/Versions/7.1/lib/python2.7/site-packages/mvpa/.. is not under GIT" SYSTEM: OS: posix Darwin 11.0.1 Darwin Kernel Version 11.0.1: Thu Jul 28 02:01:39 PDT 2011; root:xnu-1699.23.4~1/RELEASE_X86_64 Distribution: 10.7.1/x86_64 EXTERNALS: Present: cPickle, ctypes, good scipy.stats.rdist, good scipy.stats.rv_discrete.ppf, griddata, gzip, h5py, libsvm, libsvm verbosity control, lxml, matplotlib, mdp, mdp ge 2.4, nibabel, nose, numpy, pylab, pylab plottable, reportlab, scipy, skl, weave Absent: atlas_fsl, atlas_pymvpa, elasticnet, glmnet, hcluster, lars, mass, nipy, nipy.neurospin, openopt, pprocess, pywt, pywt wp reconstruct, pywt wp reconstruct fixed, rpy2, running ipython env, sg ge 0.6.4, sg ge 0.6.5, sg_fixedcachesize, shogun, shogun.krr, shogun.lightsvm, shogun.mpd, shogun.svmocas, shogun.svrlight Versions of critical externals: nibabel : 1.2.0.dev reportlab : 2.5 matplotlib : 1.0.1 scipy : 0.9.0 skl : 0.8 mdp : 3.1 numpy : 1.6.0 ctypes : 1.1.0 matplotlib : 1.0.1 lxml : 2.3.0 nifti : failed to query due to "nifti is not a known dependency key." numpy : 1.6.0 Matplotlib backend: MacOSX RUNTIME: PyMVPA Environment Variables: PyMVPA Runtime Configuration: [general] verbose = 1 [externals] have running ipython env = no have numpy = yes have scipy = yes have matplotlib = yes have lxml = yes have nibabel = yes have atlas_fsl = no have atlas_pymvpa = no have cpickle = yes have ctypes = yes have elasticnet = no have glmnet = no have good scipy.stats.rdist = yes have good scipy.stats.rv_discrete.ppf = yes have griddata = yes have gzip = yes have h5py = yes have hcluster = no have lars = no have pylab = yes have libsvm = yes have libsvm verbosity control = yes have mass = no have mdp = yes have mdp ge 2.4 = yes have nipy = no have nipy.neurospin = no have nose = yes have openopt = no have pprocess = no have pylab plottable = yes have pywt = no have pywt wp reconstruct = no have pywt wp reconstruct fixed = no have reportlab = yes have rpy2 = no have sg ge 0.6.4 = no have sg ge 0.6.5 = no have sg_fixedcachesize = no have shogun = no have shogun.krr = no have shogun.lightsvm = no have shogun.mpd = no have shogun.svmocas = no have shogun.svrlight = no have skl = yes have weave = yes On Mon, Oct 10, 2011 at 3:55 AM, Michael Hanke <[email protected]> wrote: > Hey, > > On Sat, Oct 08, 2011 at 01:35:06PM -0400, Mike E. Klein wrote: > > Just wondering if anyone had any advice on this… I'm pretty hopelessly > stuck > > and would love to be able to do this RFE-based analysis. > > Sorry for the delay and the versioning mess. Before I can say anthing > about the proper RFE code, we need to figure out what PyMVPA you are > actually running. Can you please post the output of > > >>> import mvpa > >>> mvpa.wtf() > > That should get us started. If you get an error with 'import mvpa', > please test 'import mvpa2' as you may run very recent code. > > Thanks, > > Michael > > -- > Michael Hanke > http://mih.voxindeserto.de > > _______________________________________________ > Pkg-ExpPsy-PyMVPA mailing list > [email protected] > http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/pkg-exppsy-pymvpa
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