Got it to work!
i had to run the following
LD_LIBRARY_PATH=$LD_LIBRARY_PATH:~/lib
export LD_LIBRARY_PATH
still cant run make 3rd to import the optional libraries. not that big
a deal for my purposes.
Thank you everybody. Your inquiries got me thinking in the right direction.
Yaroslav Halchenko wrote:
sorry for being useless but for me everything worked 'out of the box'
with centos 6.3 installed in a VM. During installation I have marked it
as a 'development desktop' so it installed python (2.6), numpy, swig,
pcre and even git. so I just
git clone git://github.com/PyMVPA/PyMVPA
cd PyMVPA
make
and was done no problem. so you might first try installing pcre (sudo
yum install pcre) and git I guess... and trying it again
Cheers,
On Fri, 23 Nov 2012, Yaroslav Halchenko wrote:
Hi Rico,
I have not experienced the wonders of the rebuilt RHEL yet before so
can't give a comprehensive answer (installing centos 6.3 in virtualbox
atm). But could you check if you have libpcre installed? strange
thing is that swig (AFAIK from debian package dependencees) depends on
libcpre so on a reasonable system it should get installed automagically
when installing wing.
to help me out trying to replicate your case -- what was exactly the way
you installed numpy and what version?
On Wed, 21 Nov 2012, Rico V wrote:
i am trying to build and install PyMVPA locally ON CEnOS. I
installed the dependent pythong components (numpy, scipy, etc.). I
get the following errors:
make build
/bin/sh: git: command not found
python setup.py config --noisy
Traceback (most recent call last):
File "setup.py", line 12, in ?
from numpy.distutils.core import setup, Extension
ImportError: No module named numpy.distutils.core
make: *** [build-stamp] Error 1
python setup.py build_ext
running build_ext
running build_src
build_src
building extension "mvpa2.clfs.libsmlrc.smlrc" sources
building extension "mvpa2.clfs.libsvmc._svmc" sources
swig++: mvpa2/clfs/libsvmc/svmc.i
swig -python -I/$HOMElib/python2.7/site-packages/numpy/core/include
-I3rd/libsvm -c++
-I/$HOME/lib/python2.7/site-packages/numpy/core/include -I3rd/libsvm
-o build/src.linux-x86_64-2.7/mvpa2/clfs/libsvmc/svmc_wrap.cpp
-outdir build/src.linux-x86_64-2.7/mvpa2/clfs/libsvmc
mvpa2/clfs/libsvmc/svmc.i
swig: error while loading shared libraries: libpcre.so.1: cannot
open shared object file: No such file or directory
error: command 'swig' failed with exit status 127
I'm at a loss on how to fix it. If I start up Python2.7 i can
import numpy.disutils.core
any help?
Thank you for your time
_______________________________________________
Pkg-ExpPsy-PyMVPA mailing list
[email protected]
http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/pkg-exppsy-pymvpa
_______________________________________________
Pkg-ExpPsy-PyMVPA mailing list
[email protected]
http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/pkg-exppsy-pymvpa
