Interesting, thanks! So, in "Realign" I select only "Estimate". And in this stage nothing actually happens and SPM keeps it sort "in mind". I guess it should not be a problem to chain the estimates? I mean currently I have after realign after co-register with "Estimate" So, I will do Realign:Estimate, Co-register:Estimate and Normalization. Makes sense?
On Tue, May 6, 2014 at 9:07 PM, Matthew Brett <[email protected]>wrote: > Hi, > > On Tue, May 6, 2014 at 8:24 AM, Vadim Axel <[email protected]> wrote: > > Are there packages that do joint transformation at once? > > As far as I understand the SPM uses separate steps. > > No, not if it can avoid it. If you motion correction using 'realign' > without reslicing, then SPM only changes the image affines, and > doesn't reslice the images. > > If you then do spatial normalization and select the realigned (not > resliced) data - the whole transformation is applied in one go (motion > correction + spatial normalization), > > Cheers, > > Matthew > > _______________________________________________ > Pkg-ExpPsy-PyMVPA mailing list > [email protected] > http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/pkg-exppsy-pymvpa >
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