When I construct a dataset using Dataset.from_wizard() and supply a brain mask all I get in return is a dataset that's all 0.
I show the code below: #get image data reshape and flatten rotatedImageData = rotateShape(getImageData(DATA_LOCATION)) #Get mask data mask = getImageData(MASK)#.nonzero()[0] #Load dataset ds = Dataset.from_wizard(rotatedImageData, targets=metaData['diagnosesT1'], mask=mask) The datasets that I'm loading definitely match, having checked in fslview, and were generated by fslvbm scripts. Is this something I'm doing wrong? I can't work it out. Thanks.
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