Hi Nick, Switching to an earlier version of SWIG works for me. I had problems with SWIG 3.0.5, but when I switched to SWIG 3.0.4 the problem was solved. I installed SWIG using Homebrew, which should work in the same way as installing from source.
The error message I talked about with CLANG still appears while running `python setup.py build_ext`. I guess it's not related to this issue. The message is: #### ['clang', '-fno-strict-aliasing', '-fno-common', '-dynamic', '-g', '-O2', '-DNDEBUG', '-g', '-fwrapv', '-O3', '-Wall', '-Wstrict-prototypes'] ####### Missing compiler_cxx fix for UnixCCompiler Best, Feilong On Sun, Jul 19, 2015 at 9:44 AM < pkg-exppsy-pymvpa-requ...@lists.alioth.debian.org> wrote: > Send Pkg-ExpPsy-PyMVPA mailing list submissions to > pkg-exppsy-pymvpa@lists.alioth.debian.org > > To subscribe or unsubscribe via the World Wide Web, visit > > http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/pkg-exppsy-pymvpa > > or, via email, send a message with subject or body 'help' to > pkg-exppsy-pymvpa-requ...@lists.alioth.debian.org > > You can reach the person managing the list at > pkg-exppsy-pymvpa-ow...@lists.alioth.debian.org > > When replying, please edit your Subject line so it is more specific > than "Re: Contents of Pkg-ExpPsy-PyMVPA digest..." > Today's Topics: > > 1. Re: LinearCSVMC not found in PyMVPA-upstream-2.4.0 release > (Nick Oosterhof) > > > > ---------- Forwarded message ---------- > From: Nick Oosterhof <n.n.ooster...@googlemail.com> > To: Development and support of PyMVPA < > pkg-exppsy-pymvpa@lists.alioth.debian.org> > Cc: > Date: Sun, 19 Jul 2015 15:44:23 +0200 > Subject: Re: [pymvpa] LinearCSVMC not found in PyMVPA-upstream-2.4.0 > release > > > On 15 Jul 2015, at 18:46, Feilong Ma <mafeil...@gmail.com> wrote: > > > > I had a similar problem while installing PyMVPA on Mac OS (10.10.4). I > think the problem is related to this line: > > > https://github.com/PyMVPA/PyMVPA/blob/master/mvpa2/clfs/libsvmc/_svm.py#L22 > > > > When I tried to run this line in ipython > > from mvpa2.clfs.libsvmc._svmc import C_SVC, NU_SVC, ONE_CLASS, > EPSILON_SVR > > What I got is: > > ImportError: cannot import name C_SVC > > I get the same error. Briefly (see below for details), it seems due to a > change in SWIG, with later versions giving issues. > > When running "python setup.py build_ext” and copying over the .o and .so > files from the build directory to PyMVPA’s root directory (across the > corresponding subdirectories), the following reproduces the error directly: > > python -c "from mvpa2.clfs.libsvmc._svmc import C_SVC” > > Strangely enough, the following works for the failing PyMVPA installation > (but not for the working one): > > python -c "from mvpa2.clfs.libsvmc._svmc import C_SVC_swigconstant” > > Digging a bit further, the mvpa2/clfs/libsvmc/svmc.py file differs between > my “working” (generated using SWIG 3.0.2) and “failing” (SWIG 3.0.6) PyMVPA > setup. One difference is that the working version has contents such as > > C_SVC = _svmc.C_SVC > > whereas the failing version has extra lines that includes “swigconstant” > > _svmc.C_SVC_swigconstant(_svmc) > C_SVC = _svmc.C_SVC > > (For completeness I’m including the full content of both versions below. ) > > Tracing this back further, I compiled swig from source, both for the > latest version on github and for version 3.0.0 (version 3.0.2 gave an error > when compiling). When using 3.0.0, the import works fine; with 3.0.6 or the > latest (3.0.7 development) it breaks. > > > > > I guess the problem might be related to compiling LibSVM. I vaguely > remember there was some error messages with CLANG blah blah. > > I installed GCC 5.1 and get the same problem as when using CLANG. > > To summarize, the following worked for me to get libsvm to work on OS X > Yosemite: > > - clone swig from https://github.com/swig/swig, then “git checkout -tag > tags/tags/rel-3.0.0” > - in the swig directory, run “autoconf && ./configure && make && sudo make > install” (although it gives an error when installing the man-pages due to > missing yodl2man, the binaries are installed fine). This requires autoconf, > automake and libconf. > - in the PyMVPA directory, run "python setup.py build_ext” > - copy the .so and .o files from the build directory to the PyMVPA root > directory, for example in the PyMVPA root directory do "for ext in .so .o; > do for i in `find build -iname "*${ext}"`; do j=`echo $i | cut -f3- -d/`; > cp $i $j; done; done” > > If anyone can confirm that using an earlier version of SWIG fixes the > problem, that would be great. In that case I can also raise the issue with > the developers. > > > > (Below: contents of mvpa2/clfs/libsvmc/svmc.py for working and failing > libsvm in PyMVPA) > > ################ > # *Failing* mvpa2/clfs/libsvmc/svmc.py > ################ > > # This file was automatically generated by SWIG (http://www.swig.org). > # Version 3.0.6 > # > # Do not make changes to this file unless you know what you are > doing--modify > # the SWIG interface file instead. > > > > > > from sys import version_info > if version_info >= (2, 6, 0): > def swig_import_helper(): > from os.path import dirname > import imp > fp = None > try: > fp, pathname, description = imp.find_module('_svmc', > [dirname(__file__)]) > except ImportError: > import _svmc > return _svmc > if fp is not None: > try: > _mod = imp.load_module('_svmc', fp, pathname, description) > finally: > fp.close() > return _mod > _svmc = swig_import_helper() > del swig_import_helper > else: > import _svmc > del version_info > try: > _swig_property = property > except NameError: > pass # Python < 2.2 doesn't have 'property'. > > > def _swig_setattr_nondynamic(self, class_type, name, value, static=1): > if (name == "thisown"): > return self.this.own(value) > if (name == "this"): > if type(value).__name__ == 'SwigPyObject': > self.__dict__[name] = value > return > method = class_type.__swig_setmethods__.get(name, None) > if method: > return method(self, value) > if (not static): > if _newclass: > object.__setattr__(self, name, value) > else: > self.__dict__[name] = value > else: > raise AttributeError("You cannot add attributes to %s" % self) > > > def _swig_setattr(self, class_type, name, value): > return _swig_setattr_nondynamic(self, class_type, name, value, 0) > > > def _swig_getattr_nondynamic(self, class_type, name, static=1): > if (name == "thisown"): > return self.this.own() > method = class_type.__swig_getmethods__.get(name, None) > if method: > return method(self) > if (not static): > return object.__getattr__(self, name) > else: > raise AttributeError(name) > > def _swig_getattr(self, class_type, name): > return _swig_getattr_nondynamic(self, class_type, name, 0) > > > def _swig_repr(self): > try: > strthis = "proxy of " + self.this.__repr__() > except: > strthis = "" > return "<%s.%s; %s >" % (self.__class__.__module__, > self.__class__.__name__, strthis,) > > try: > _object = object > _newclass = 1 > except AttributeError: > class _object: > pass > _newclass = 0 > > > > _svmc.__version___swigconstant(_svmc) > __version__ = _svmc.__version__ > > _svmc.C_SVC_swigconstant(_svmc) > C_SVC = _svmc.C_SVC > > _svmc.NU_SVC_swigconstant(_svmc) > NU_SVC = _svmc.NU_SVC > > _svmc.ONE_CLASS_swigconstant(_svmc) > ONE_CLASS = _svmc.ONE_CLASS > > _svmc.EPSILON_SVR_swigconstant(_svmc) > EPSILON_SVR = _svmc.EPSILON_SVR > > _svmc.NU_SVR_swigconstant(_svmc) > NU_SVR = _svmc.NU_SVR > > _svmc.LINEAR_swigconstant(_svmc) > LINEAR = _svmc.LINEAR > > _svmc.POLY_swigconstant(_svmc) > POLY = _svmc.POLY > > _svmc.RBF_swigconstant(_svmc) > RBF = _svmc.RBF > > _svmc.SIGMOID_swigconstant(_svmc) > SIGMOID = _svmc.SIGMOID > > _svmc.PRECOMPUTED_swigconstant(_svmc) > PRECOMPUTED = _svmc.PRECOMPUTED > class svm_parameter(_object): > __swig_setmethods__ = {} > __setattr__ = lambda self, name, value: _swig_setattr(self, > svm_parameter, name, value) > __swig_getmethods__ = {} > __getattr__ = lambda self, name: _swig_getattr(self, svm_parameter, > name) > __repr__ = _swig_repr > __swig_setmethods__["svm_type"] = _svmc.svm_parameter_svm_type_set > __swig_getmethods__["svm_type"] = _svmc.svm_parameter_svm_type_get > if _newclass: > svm_type = _swig_property(_svmc.svm_parameter_svm_type_get, > _svmc.svm_parameter_svm_type_set) > __swig_setmethods__["kernel_type"] = > _svmc.svm_parameter_kernel_type_set > __swig_getmethods__["kernel_type"] = > _svmc.svm_parameter_kernel_type_get > if _newclass: > kernel_type = _swig_property(_svmc.svm_parameter_kernel_type_get, > _svmc.svm_parameter_kernel_type_set) > __swig_setmethods__["degree"] = _svmc.svm_parameter_degree_set > __swig_getmethods__["degree"] = _svmc.svm_parameter_degree_get > if _newclass: > degree = _swig_property(_svmc.svm_parameter_degree_get, > _svmc.svm_parameter_degree_set) > __swig_setmethods__["gamma"] = _svmc.svm_parameter_gamma_set > __swig_getmethods__["gamma"] = _svmc.svm_parameter_gamma_get > if _newclass: > gamma = _swig_property(_svmc.svm_parameter_gamma_get, > _svmc.svm_parameter_gamma_set) > __swig_setmethods__["coef0"] = _svmc.svm_parameter_coef0_set > __swig_getmethods__["coef0"] = _svmc.svm_parameter_coef0_get > if _newclass: > coef0 = _swig_property(_svmc.svm_parameter_coef0_get, > _svmc.svm_parameter_coef0_set) > __swig_setmethods__["cache_size"] = _svmc.svm_parameter_cache_size_set > __swig_getmethods__["cache_size"] = _svmc.svm_parameter_cache_size_get > if _newclass: > cache_size = _swig_property(_svmc.svm_parameter_cache_size_get, > _svmc.svm_parameter_cache_size_set) > __swig_setmethods__["eps"] = _svmc.svm_parameter_eps_set > __swig_getmethods__["eps"] = _svmc.svm_parameter_eps_get > if _newclass: > eps = _swig_property(_svmc.svm_parameter_eps_get, > _svmc.svm_parameter_eps_set) > __swig_setmethods__["C"] = _svmc.svm_parameter_C_set > __swig_getmethods__["C"] = _svmc.svm_parameter_C_get > if _newclass: > C = _swig_property(_svmc.svm_parameter_C_get, > _svmc.svm_parameter_C_set) > __swig_setmethods__["nr_weight"] = _svmc.svm_parameter_nr_weight_set > __swig_getmethods__["nr_weight"] = _svmc.svm_parameter_nr_weight_get > if _newclass: > nr_weight = _swig_property(_svmc.svm_parameter_nr_weight_get, > _svmc.svm_parameter_nr_weight_set) > __swig_setmethods__["weight_label"] = > _svmc.svm_parameter_weight_label_set > __swig_getmethods__["weight_label"] = > _svmc.svm_parameter_weight_label_get > if _newclass: > weight_label = > _swig_property(_svmc.svm_parameter_weight_label_get, > _svmc.svm_parameter_weight_label_set) > __swig_setmethods__["weight"] = _svmc.svm_parameter_weight_set > __swig_getmethods__["weight"] = _svmc.svm_parameter_weight_get > if _newclass: > weight = _swig_property(_svmc.svm_parameter_weight_get, > _svmc.svm_parameter_weight_set) > __swig_setmethods__["nu"] = _svmc.svm_parameter_nu_set > __swig_getmethods__["nu"] = _svmc.svm_parameter_nu_get > if _newclass: > nu = _swig_property(_svmc.svm_parameter_nu_get, > _svmc.svm_parameter_nu_set) > __swig_setmethods__["p"] = _svmc.svm_parameter_p_set > __swig_getmethods__["p"] = _svmc.svm_parameter_p_get > if _newclass: > p = _swig_property(_svmc.svm_parameter_p_get, > _svmc.svm_parameter_p_set) > __swig_setmethods__["shrinking"] = _svmc.svm_parameter_shrinking_set > __swig_getmethods__["shrinking"] = _svmc.svm_parameter_shrinking_get > if _newclass: > shrinking = _swig_property(_svmc.svm_parameter_shrinking_get, > _svmc.svm_parameter_shrinking_set) > __swig_setmethods__["probability"] = > _svmc.svm_parameter_probability_set > __swig_getmethods__["probability"] = > _svmc.svm_parameter_probability_get > if _newclass: > probability = _swig_property(_svmc.svm_parameter_probability_get, > _svmc.svm_parameter_probability_set) > > def __init__(self): > this = _svmc.new_svm_parameter() > try: > self.this.append(this) > except: > self.this = this > __swig_destroy__ = _svmc.delete_svm_parameter > __del__ = lambda self: None > svm_parameter_swigregister = _svmc.svm_parameter_swigregister > svm_parameter_swigregister(svm_parameter) > > class svm_problem(_object): > __swig_setmethods__ = {} > __setattr__ = lambda self, name, value: _swig_setattr(self, > svm_problem, name, value) > __swig_getmethods__ = {} > __getattr__ = lambda self, name: _swig_getattr(self, svm_problem, name) > __repr__ = _swig_repr > __swig_setmethods__["l"] = _svmc.svm_problem_l_set > __swig_getmethods__["l"] = _svmc.svm_problem_l_get > if _newclass: > l = _swig_property(_svmc.svm_problem_l_get, > _svmc.svm_problem_l_set) > __swig_setmethods__["y"] = _svmc.svm_problem_y_set > __swig_getmethods__["y"] = _svmc.svm_problem_y_get > if _newclass: > y = _swig_property(_svmc.svm_problem_y_get, > _svmc.svm_problem_y_set) > __swig_setmethods__["x"] = _svmc.svm_problem_x_set > __swig_getmethods__["x"] = _svmc.svm_problem_x_get > if _newclass: > x = _swig_property(_svmc.svm_problem_x_get, > _svmc.svm_problem_x_set) > > def __init__(self): > this = _svmc.new_svm_problem() > try: > self.this.append(this) > except: > self.this = this > __swig_destroy__ = _svmc.delete_svm_problem > __del__ = lambda self: None > svm_problem_swigregister = _svmc.svm_problem_swigregister > svm_problem_swigregister(svm_problem) > > class svm_model(_object): > __swig_setmethods__ = {} > __setattr__ = lambda self, name, value: _swig_setattr(self, svm_model, > name, value) > __swig_getmethods__ = {} > __getattr__ = lambda self, name: _swig_getattr(self, svm_model, name) > __repr__ = _swig_repr > __swig_setmethods__["param"] = _svmc.svm_model_param_set > __swig_getmethods__["param"] = _svmc.svm_model_param_get > if _newclass: > param = _swig_property(_svmc.svm_model_param_get, > _svmc.svm_model_param_set) > __swig_setmethods__["nr_class"] = _svmc.svm_model_nr_class_set > __swig_getmethods__["nr_class"] = _svmc.svm_model_nr_class_get > if _newclass: > nr_class = _swig_property(_svmc.svm_model_nr_class_get, > _svmc.svm_model_nr_class_set) > __swig_setmethods__["l"] = _svmc.svm_model_l_set > __swig_getmethods__["l"] = _svmc.svm_model_l_get > if _newclass: > l = _swig_property(_svmc.svm_model_l_get, _svmc.svm_model_l_set) > __swig_setmethods__["SV"] = _svmc.svm_model_SV_set > __swig_getmethods__["SV"] = _svmc.svm_model_SV_get > if _newclass: > SV = _swig_property(_svmc.svm_model_SV_get, _svmc.svm_model_SV_set) > __swig_setmethods__["sv_coef"] = _svmc.svm_model_sv_coef_set > __swig_getmethods__["sv_coef"] = _svmc.svm_model_sv_coef_get > if _newclass: > sv_coef = _swig_property(_svmc.svm_model_sv_coef_get, > _svmc.svm_model_sv_coef_set) > __swig_setmethods__["rho"] = _svmc.svm_model_rho_set > __swig_getmethods__["rho"] = _svmc.svm_model_rho_get > if _newclass: > rho = _swig_property(_svmc.svm_model_rho_get, > _svmc.svm_model_rho_set) > __swig_setmethods__["probA"] = _svmc.svm_model_probA_set > __swig_getmethods__["probA"] = _svmc.svm_model_probA_get > if _newclass: > probA = _swig_property(_svmc.svm_model_probA_get, > _svmc.svm_model_probA_set) > __swig_setmethods__["probB"] = _svmc.svm_model_probB_set > __swig_getmethods__["probB"] = _svmc.svm_model_probB_get > if _newclass: > probB = _swig_property(_svmc.svm_model_probB_get, > _svmc.svm_model_probB_set) > __swig_setmethods__["label"] = _svmc.svm_model_label_set > __swig_getmethods__["label"] = _svmc.svm_model_label_get > if _newclass: > label = _swig_property(_svmc.svm_model_label_get, > _svmc.svm_model_label_set) > __swig_setmethods__["nSV"] = _svmc.svm_model_nSV_set > __swig_getmethods__["nSV"] = _svmc.svm_model_nSV_get > if _newclass: > nSV = _swig_property(_svmc.svm_model_nSV_get, > _svmc.svm_model_nSV_set) > __swig_setmethods__["free_sv"] = _svmc.svm_model_free_sv_set > __swig_getmethods__["free_sv"] = _svmc.svm_model_free_sv_get > if _newclass: > free_sv = _swig_property(_svmc.svm_model_free_sv_get, > _svmc.svm_model_free_sv_set) > > def __init__(self): > this = _svmc.new_svm_model() > try: > self.this.append(this) > except: > self.this = this > __swig_destroy__ = _svmc.delete_svm_model > __del__ = lambda self: None > svm_model_swigregister = _svmc.svm_model_swigregister > svm_model_swigregister(svm_model) > > > def svm_set_verbosity(verbosity_flag): > return _svmc.svm_set_verbosity(verbosity_flag) > svm_set_verbosity = _svmc.svm_set_verbosity > > def svm_train(prob, param): > return _svmc.svm_train(prob, param) > svm_train = _svmc.svm_train > > def svm_cross_validation(prob, param, nr_fold, target): > return _svmc.svm_cross_validation(prob, param, nr_fold, target) > svm_cross_validation = _svmc.svm_cross_validation > > def svm_save_model(model_file_name, model): > return _svmc.svm_save_model(model_file_name, model) > svm_save_model = _svmc.svm_save_model > > def svm_load_model(model_file_name): > return _svmc.svm_load_model(model_file_name) > svm_load_model = _svmc.svm_load_model > > def svm_get_svm_type(model): > return _svmc.svm_get_svm_type(model) > svm_get_svm_type = _svmc.svm_get_svm_type > > def svm_get_nr_class(model): > return _svmc.svm_get_nr_class(model) > svm_get_nr_class = _svmc.svm_get_nr_class > > def svm_get_labels(model, label): > return _svmc.svm_get_labels(model, label) > svm_get_labels = _svmc.svm_get_labels > > def svm_get_svr_probability(model): > return _svmc.svm_get_svr_probability(model) > svm_get_svr_probability = _svmc.svm_get_svr_probability > > def svm_predict_values(model, x, decvalue): > return _svmc.svm_predict_values(model, x, decvalue) > svm_predict_values = _svmc.svm_predict_values > > def svm_predict(model, x): > return _svmc.svm_predict(model, x) > svm_predict = _svmc.svm_predict > > def svm_predict_probability(model, x, prob_estimates): > return _svmc.svm_predict_probability(model, x, prob_estimates) > svm_predict_probability = _svmc.svm_predict_probability > > def svm_check_parameter(prob, param): > return _svmc.svm_check_parameter(prob, param) > svm_check_parameter = _svmc.svm_check_parameter > > def svm_check_probability_model(model): > return _svmc.svm_check_probability_model(model) > svm_check_probability_model = _svmc.svm_check_probability_model > > def svm_node_matrix2numpy_array(matrix, rows, cols): > return _svmc.svm_node_matrix2numpy_array(matrix, rows, cols) > svm_node_matrix2numpy_array = _svmc.svm_node_matrix2numpy_array > > def doubleppcarray2numpy_array(data, rows, cols): > return _svmc.doubleppcarray2numpy_array(data, rows, cols) > doubleppcarray2numpy_array = _svmc.doubleppcarray2numpy_array > > def new_int(nelements): > return _svmc.new_int(nelements) > new_int = _svmc.new_int > > def delete_int(ary): > return _svmc.delete_int(ary) > delete_int = _svmc.delete_int > > def int_getitem(ary, index): > return _svmc.int_getitem(ary, index) > int_getitem = _svmc.int_getitem > > def int_setitem(ary, index, value): > return _svmc.int_setitem(ary, index, value) > int_setitem = _svmc.int_setitem > > def new_double(nelements): > return _svmc.new_double(nelements) > new_double = _svmc.new_double > > def delete_double(ary): > return _svmc.delete_double(ary) > delete_double = _svmc.delete_double > > def double_getitem(ary, index): > return _svmc.double_getitem(ary, index) > double_getitem = _svmc.double_getitem > > def double_setitem(ary, index, value): > return _svmc.double_setitem(ary, index, value) > double_setitem = _svmc.double_setitem > > def svm_node_array(size): > return _svmc.svm_node_array(size) > svm_node_array = _svmc.svm_node_array > > def svm_node_array_set(*args): > return _svmc.svm_node_array_set(*args) > svm_node_array_set = _svmc.svm_node_array_set > > def svm_node_array_destroy(array): > return _svmc.svm_node_array_destroy(array) > svm_node_array_destroy = _svmc.svm_node_array_destroy > > def svm_node_matrix(size): > return _svmc.svm_node_matrix(size) > svm_node_matrix = _svmc.svm_node_matrix > > def svm_node_matrix_set(matrix, i, array): > return _svmc.svm_node_matrix_set(matrix, i, array) > svm_node_matrix_set = _svmc.svm_node_matrix_set > > def svm_node_matrix_destroy(matrix): > return _svmc.svm_node_matrix_destroy(matrix) > svm_node_matrix_destroy = _svmc.svm_node_matrix_destroy > > def svm_destroy_model_helper(model_ptr): > return _svmc.svm_destroy_model_helper(model_ptr) > svm_destroy_model_helper = _svmc.svm_destroy_model_helper > # This file is compatible with both classic and new-style classes. > > > > > > ################ > # *Working* mvpa2/clfs/libsvmc/svmc.py > ################ > > > # This file was automatically generated by SWIG (http://www.swig.org). > # Version 3.0.2 > # > # Do not make changes to this file unless you know what you are > doing--modify > # the SWIG interface file instead. > > > > > > from sys import version_info > if version_info >= (2,6,0): > def swig_import_helper(): > from os.path import dirname > import imp > fp = None > try: > fp, pathname, description = imp.find_module('_svmc', > [dirname(__file__)]) > except ImportError: > import _svmc > return _svmc > if fp is not None: > try: > _mod = imp.load_module('_svmc', fp, pathname, description) > finally: > fp.close() > return _mod > _svmc = swig_import_helper() > del swig_import_helper > else: > import _svmc > del version_info > try: > _swig_property = property > except NameError: > pass # Python < 2.2 doesn't have 'property'. > def _swig_setattr_nondynamic(self,class_type,name,value,static=1): > if (name == "thisown"): return self.this.own(value) > if (name == "this"): > if type(value).__name__ == 'SwigPyObject': > self.__dict__[name] = value > return > method = class_type.__swig_setmethods__.get(name,None) > if method: return method(self,value) > if (not static): > self.__dict__[name] = value > else: > raise AttributeError("You cannot add attributes to %s" % self) > > def _swig_setattr(self,class_type,name,value): > return _swig_setattr_nondynamic(self,class_type,name,value,0) > > def _swig_getattr(self,class_type,name): > if (name == "thisown"): return self.this.own() > method = class_type.__swig_getmethods__.get(name,None) > if method: return method(self) > raise AttributeError(name) > > def _swig_repr(self): > try: strthis = "proxy of " + self.this.__repr__() > except: strthis = "" > return "<%s.%s; %s >" % (self.__class__.__module__, > self.__class__.__name__, strthis,) > > try: > _object = object > _newclass = 1 > except AttributeError: > class _object : pass > _newclass = 0 > > > __version__ = _svmc.__version__ > C_SVC = _svmc.C_SVC > NU_SVC = _svmc.NU_SVC > ONE_CLASS = _svmc.ONE_CLASS > EPSILON_SVR = _svmc.EPSILON_SVR > NU_SVR = _svmc.NU_SVR > LINEAR = _svmc.LINEAR > POLY = _svmc.POLY > RBF = _svmc.RBF > SIGMOID = _svmc.SIGMOID > PRECOMPUTED = _svmc.PRECOMPUTED > class svm_parameter(_object): > __swig_setmethods__ = {} > __setattr__ = lambda self, name, value: _swig_setattr(self, > svm_parameter, name, value) > __swig_getmethods__ = {} > __getattr__ = lambda self, name: _swig_getattr(self, svm_parameter, > name) > __repr__ = _swig_repr > __swig_setmethods__["svm_type"] = _svmc.svm_parameter_svm_type_set > __swig_getmethods__["svm_type"] = _svmc.svm_parameter_svm_type_get > if _newclass:svm_type = > _swig_property(_svmc.svm_parameter_svm_type_get, > _svmc.svm_parameter_svm_type_set) > __swig_setmethods__["kernel_type"] = > _svmc.svm_parameter_kernel_type_set > __swig_getmethods__["kernel_type"] = > _svmc.svm_parameter_kernel_type_get > if _newclass:kernel_type = > _swig_property(_svmc.svm_parameter_kernel_type_get, > _svmc.svm_parameter_kernel_type_set) > __swig_setmethods__["degree"] = _svmc.svm_parameter_degree_set > __swig_getmethods__["degree"] = _svmc.svm_parameter_degree_get > if _newclass:degree = _swig_property(_svmc.svm_parameter_degree_get, > _svmc.svm_parameter_degree_set) > __swig_setmethods__["gamma"] = _svmc.svm_parameter_gamma_set > __swig_getmethods__["gamma"] = _svmc.svm_parameter_gamma_get > if _newclass:gamma = _swig_property(_svmc.svm_parameter_gamma_get, > _svmc.svm_parameter_gamma_set) > __swig_setmethods__["coef0"] = _svmc.svm_parameter_coef0_set > __swig_getmethods__["coef0"] = _svmc.svm_parameter_coef0_get > if _newclass:coef0 = _swig_property(_svmc.svm_parameter_coef0_get, > _svmc.svm_parameter_coef0_set) > __swig_setmethods__["cache_size"] = _svmc.svm_parameter_cache_size_set > __swig_getmethods__["cache_size"] = _svmc.svm_parameter_cache_size_get > if _newclass:cache_size = > _swig_property(_svmc.svm_parameter_cache_size_get, > _svmc.svm_parameter_cache_size_set) > __swig_setmethods__["eps"] = _svmc.svm_parameter_eps_set > __swig_getmethods__["eps"] = _svmc.svm_parameter_eps_get > if _newclass:eps = _swig_property(_svmc.svm_parameter_eps_get, > _svmc.svm_parameter_eps_set) > __swig_setmethods__["C"] = _svmc.svm_parameter_C_set > __swig_getmethods__["C"] = _svmc.svm_parameter_C_get > if _newclass:C = _swig_property(_svmc.svm_parameter_C_get, > _svmc.svm_parameter_C_set) > __swig_setmethods__["nr_weight"] = _svmc.svm_parameter_nr_weight_set > __swig_getmethods__["nr_weight"] = _svmc.svm_parameter_nr_weight_get > if _newclass:nr_weight = > _swig_property(_svmc.svm_parameter_nr_weight_get, > _svmc.svm_parameter_nr_weight_set) > __swig_setmethods__["weight_label"] = > _svmc.svm_parameter_weight_label_set > __swig_getmethods__["weight_label"] = > _svmc.svm_parameter_weight_label_get > if _newclass:weight_label = > _swig_property(_svmc.svm_parameter_weight_label_get, > _svmc.svm_parameter_weight_label_set) > __swig_setmethods__["weight"] = _svmc.svm_parameter_weight_set > __swig_getmethods__["weight"] = _svmc.svm_parameter_weight_get > if _newclass:weight = _swig_property(_svmc.svm_parameter_weight_get, > _svmc.svm_parameter_weight_set) > __swig_setmethods__["nu"] = _svmc.svm_parameter_nu_set > __swig_getmethods__["nu"] = _svmc.svm_parameter_nu_get > if _newclass:nu = _swig_property(_svmc.svm_parameter_nu_get, > _svmc.svm_parameter_nu_set) > __swig_setmethods__["p"] = _svmc.svm_parameter_p_set > __swig_getmethods__["p"] = _svmc.svm_parameter_p_get > if _newclass:p = _swig_property(_svmc.svm_parameter_p_get, > _svmc.svm_parameter_p_set) > __swig_setmethods__["shrinking"] = _svmc.svm_parameter_shrinking_set > __swig_getmethods__["shrinking"] = _svmc.svm_parameter_shrinking_get > if _newclass:shrinking = > _swig_property(_svmc.svm_parameter_shrinking_get, > _svmc.svm_parameter_shrinking_set) > __swig_setmethods__["probability"] = > _svmc.svm_parameter_probability_set > __swig_getmethods__["probability"] = > _svmc.svm_parameter_probability_get > if _newclass:probability = > _swig_property(_svmc.svm_parameter_probability_get, > _svmc.svm_parameter_probability_set) > def __init__(self): > this = _svmc.new_svm_parameter() > try: self.this.append(this) > except: self.this = this > __swig_destroy__ = _svmc.delete_svm_parameter > __del__ = lambda self : None; > svm_parameter_swigregister = _svmc.svm_parameter_swigregister > svm_parameter_swigregister(svm_parameter) > > class svm_problem(_object): > __swig_setmethods__ = {} > __setattr__ = lambda self, name, value: _swig_setattr(self, > svm_problem, name, value) > __swig_getmethods__ = {} > __getattr__ = lambda self, name: _swig_getattr(self, svm_problem, name) > __repr__ = _swig_repr > __swig_setmethods__["l"] = _svmc.svm_problem_l_set > __swig_getmethods__["l"] = _svmc.svm_problem_l_get > if _newclass:l = _swig_property(_svmc.svm_problem_l_get, > _svmc.svm_problem_l_set) > __swig_setmethods__["y"] = _svmc.svm_problem_y_set > __swig_getmethods__["y"] = _svmc.svm_problem_y_get > if _newclass:y = _swig_property(_svmc.svm_problem_y_get, > _svmc.svm_problem_y_set) > __swig_setmethods__["x"] = _svmc.svm_problem_x_set > __swig_getmethods__["x"] = _svmc.svm_problem_x_get > if _newclass:x = _swig_property(_svmc.svm_problem_x_get, > _svmc.svm_problem_x_set) > def __init__(self): > this = _svmc.new_svm_problem() > try: self.this.append(this) > except: self.this = this > __swig_destroy__ = _svmc.delete_svm_problem > __del__ = lambda self : None; > svm_problem_swigregister = _svmc.svm_problem_swigregister > svm_problem_swigregister(svm_problem) > > class svm_model(_object): > __swig_setmethods__ = {} > __setattr__ = lambda self, name, value: _swig_setattr(self, svm_model, > name, value) > __swig_getmethods__ = {} > __getattr__ = lambda self, name: _swig_getattr(self, svm_model, name) > __repr__ = _swig_repr > __swig_setmethods__["param"] = _svmc.svm_model_param_set > __swig_getmethods__["param"] = _svmc.svm_model_param_get > if _newclass:param = _swig_property(_svmc.svm_model_param_get, > _svmc.svm_model_param_set) > __swig_setmethods__["nr_class"] = _svmc.svm_model_nr_class_set > __swig_getmethods__["nr_class"] = _svmc.svm_model_nr_class_get > if _newclass:nr_class = _swig_property(_svmc.svm_model_nr_class_get, > _svmc.svm_model_nr_class_set) > __swig_setmethods__["l"] = _svmc.svm_model_l_set > __swig_getmethods__["l"] = _svmc.svm_model_l_get > if _newclass:l = _swig_property(_svmc.svm_model_l_get, > _svmc.svm_model_l_set) > __swig_setmethods__["SV"] = _svmc.svm_model_SV_set > __swig_getmethods__["SV"] = _svmc.svm_model_SV_get > if _newclass:SV = _swig_property(_svmc.svm_model_SV_get, > _svmc.svm_model_SV_set) > __swig_setmethods__["sv_coef"] = _svmc.svm_model_sv_coef_set > __swig_getmethods__["sv_coef"] = _svmc.svm_model_sv_coef_get > if _newclass:sv_coef = _swig_property(_svmc.svm_model_sv_coef_get, > _svmc.svm_model_sv_coef_set) > __swig_setmethods__["rho"] = _svmc.svm_model_rho_set > __swig_getmethods__["rho"] = _svmc.svm_model_rho_get > if _newclass:rho = _swig_property(_svmc.svm_model_rho_get, > _svmc.svm_model_rho_set) > __swig_setmethods__["probA"] = _svmc.svm_model_probA_set > __swig_getmethods__["probA"] = _svmc.svm_model_probA_get > if _newclass:probA = _swig_property(_svmc.svm_model_probA_get, > _svmc.svm_model_probA_set) > __swig_setmethods__["probB"] = _svmc.svm_model_probB_set > __swig_getmethods__["probB"] = _svmc.svm_model_probB_get > if _newclass:probB = _swig_property(_svmc.svm_model_probB_get, > _svmc.svm_model_probB_set) > __swig_setmethods__["label"] = _svmc.svm_model_label_set > __swig_getmethods__["label"] = _svmc.svm_model_label_get > if _newclass:label = _swig_property(_svmc.svm_model_label_get, > _svmc.svm_model_label_set) > __swig_setmethods__["nSV"] = _svmc.svm_model_nSV_set > __swig_getmethods__["nSV"] = _svmc.svm_model_nSV_get > if _newclass:nSV = _swig_property(_svmc.svm_model_nSV_get, > _svmc.svm_model_nSV_set) > __swig_setmethods__["free_sv"] = _svmc.svm_model_free_sv_set > __swig_getmethods__["free_sv"] = _svmc.svm_model_free_sv_get > if _newclass:free_sv = _swig_property(_svmc.svm_model_free_sv_get, > _svmc.svm_model_free_sv_set) > def __init__(self): > this = _svmc.new_svm_model() > try: self.this.append(this) > except: self.this = this > __swig_destroy__ = _svmc.delete_svm_model > __del__ = lambda self : None; > svm_model_swigregister = _svmc.svm_model_swigregister > svm_model_swigregister(svm_model) > > > def svm_set_verbosity(*args): > return _svmc.svm_set_verbosity(*args) > svm_set_verbosity = _svmc.svm_set_verbosity > > def svm_train(*args): > return _svmc.svm_train(*args) > svm_train = _svmc.svm_train > > def svm_cross_validation(*args): > return _svmc.svm_cross_validation(*args) > svm_cross_validation = _svmc.svm_cross_validation > > def svm_save_model(*args): > return _svmc.svm_save_model(*args) > svm_save_model = _svmc.svm_save_model > > def svm_load_model(*args): > return _svmc.svm_load_model(*args) > svm_load_model = _svmc.svm_load_model > > def svm_get_svm_type(*args): > return _svmc.svm_get_svm_type(*args) > svm_get_svm_type = _svmc.svm_get_svm_type > > def svm_get_nr_class(*args): > return _svmc.svm_get_nr_class(*args) > svm_get_nr_class = _svmc.svm_get_nr_class > > def svm_get_labels(*args): > return _svmc.svm_get_labels(*args) > svm_get_labels = _svmc.svm_get_labels > > def svm_get_svr_probability(*args): > return _svmc.svm_get_svr_probability(*args) > svm_get_svr_probability = _svmc.svm_get_svr_probability > > def svm_predict_values(*args): > return _svmc.svm_predict_values(*args) > svm_predict_values = _svmc.svm_predict_values > > def svm_predict(*args): > return _svmc.svm_predict(*args) > svm_predict = _svmc.svm_predict > > def svm_predict_probability(*args): > return _svmc.svm_predict_probability(*args) > svm_predict_probability = _svmc.svm_predict_probability > > def svm_check_parameter(*args): > return _svmc.svm_check_parameter(*args) > svm_check_parameter = _svmc.svm_check_parameter > > def svm_check_probability_model(*args): > return _svmc.svm_check_probability_model(*args) > svm_check_probability_model = _svmc.svm_check_probability_model > > def svm_node_matrix2numpy_array(*args): > return _svmc.svm_node_matrix2numpy_array(*args) > svm_node_matrix2numpy_array = _svmc.svm_node_matrix2numpy_array > > def doubleppcarray2numpy_array(*args): > return _svmc.doubleppcarray2numpy_array(*args) > doubleppcarray2numpy_array = _svmc.doubleppcarray2numpy_array > > def new_int(*args): > return _svmc.new_int(*args) > new_int = _svmc.new_int > > def delete_int(*args): > return _svmc.delete_int(*args) > delete_int = _svmc.delete_int > > def int_getitem(*args): > return _svmc.int_getitem(*args) > int_getitem = _svmc.int_getitem > > def int_setitem(*args): > return _svmc.int_setitem(*args) > int_setitem = _svmc.int_setitem > > def new_double(*args): > return _svmc.new_double(*args) > new_double = _svmc.new_double > > def delete_double(*args): > return _svmc.delete_double(*args) > delete_double = _svmc.delete_double > > def double_getitem(*args): > return _svmc.double_getitem(*args) > double_getitem = _svmc.double_getitem > > def double_setitem(*args): > return _svmc.double_setitem(*args) > double_setitem = _svmc.double_setitem > > def svm_node_array(*args): > return _svmc.svm_node_array(*args) > svm_node_array = _svmc.svm_node_array > > def svm_node_array_set(*args): > return _svmc.svm_node_array_set(*args) > svm_node_array_set = _svmc.svm_node_array_set > > def svm_node_array_destroy(*args): > return _svmc.svm_node_array_destroy(*args) > svm_node_array_destroy = _svmc.svm_node_array_destroy > > def svm_node_matrix(*args): > return _svmc.svm_node_matrix(*args) > svm_node_matrix = _svmc.svm_node_matrix > > def svm_node_matrix_set(*args): > return _svmc.svm_node_matrix_set(*args) > svm_node_matrix_set = _svmc.svm_node_matrix_set > > def svm_node_matrix_destroy(*args): > return _svmc.svm_node_matrix_destroy(*args) > svm_node_matrix_destroy = _svmc.svm_node_matrix_destroy > > def svm_destroy_model_helper(*args): > return _svmc.svm_destroy_model_helper(*args) > svm_destroy_model_helper = _svmc.svm_destroy_model_helper > # This file is compatible with both classic and new-style classes. > > > > _______________________________________________ > Pkg-ExpPsy-PyMVPA mailing list > Pkg-ExpPsy-PyMVPA@lists.alioth.debian.org > http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/pkg-exppsy-pymvpa
_______________________________________________ Pkg-ExpPsy-PyMVPA mailing list Pkg-ExpPsy-PyMVPA@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/pkg-exppsy-pymvpa