Hi, Thanks for the answer! I will try this when I get AFNI installed.
-Maria 2016-01-31 19:02 GMT+02:00 Nick Oosterhof <[email protected]>: > > > On 30 Jan 2016, at 17:09, Maria Hakonen <[email protected]> wrote: > > > > I would like to try surface-based searchlight. I have now reconstructed > the inner (white) and outer (pial) surfaces using FreeSurfer autorecon-all. > Is there any way to check if the surfaces are successfully reconstructed? > > The pymvpa2-prep-afni-surf script can be used for surface preprocessing. > It requires working FreeSurfer, PyMVPA and AFNI packages. Run "suma -spec > your_spec_file.spec" to visualize the surfaces in SUMA. > > It can be used to align surfaces to either an anatomical or functional > volume. It can also resample surfaces to standard topology and merges left > and right hemispheres. Recent versions of the script generate some QA > images that may be useful to verify coregistration. But in the end, it's > usually best to view surfaces together with an anatomical overlay to check > whether the surfaces are properly reconstructed and aligned. > > Does that answer your question? > > > _______________________________________________ > Pkg-ExpPsy-PyMVPA mailing list > [email protected] > http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/pkg-exppsy-pymvpa >
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