> On 12 Feb 2016, at 12:50, Maria Hakonen <maria.hako...@gmail.com> wrote:
>
> I have reconstructed pial and white surfaces using FreeSurfer, and now I
> would need to preprocess them with AFNI and SUMA using the
> pymvpa2-prep-afni-surf wrapper script. I wonder if you have any example for
> this?
Running
pymvpa2-prep-afni-surf -h
gives (with other output not shown here):
For typical usage it requires three arguments:
(1) "-e epi_filename" or "-a anat_filename"
(2) "-d freesurfer/directory/surf"
(3) "-r outputdir"'
Does that answer your question?
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