Sure (doingprettywellandhowareyou?). Below is the output (I had a feeling I pasted it in the first e-mail but apparently not)
*python -c 'import mvpa2; print mvpa2.wtf()'*/usr/lib/python2.7/dist-packages/nose/util.py:14: DeprecationWarning: The compiler package is deprecated and removed in Python 3.x. from compiler.consts import CO_GENERATOR Current date: 2017-09-13 09:34 PyMVPA: Version: 2.1.0 Hash: 828f4b4bea2488f8c7e3f6c2446a445d77325338 Path: /usr/lib/pymodules/python2.7/mvpa2/__init__.pyc Version control (GIT): GIT information could not be obtained due "/usr/lib/pymodules/python2.7/mvpa2/.. is not under GIT" SYSTEM: OS: posix Linux 3.2.0-4-amd64 #1 SMP Debian 3.2.89-2 Distribution: debian/7.11 EXTERNALS: Present: atlas_fsl, cPickle, ctypes, good scipy.stats.rdist, good scipy.stats.rv_discrete.ppf, griddata, gzip, h5py, ipython, liblapack.so, libsvm, libsvm verbosity control, lxml, matplotlib, mdp, mdp ge 2.4, nibabel, nose, numpy, pylab, pylab plottable, pywt, pywt wp reconstruct, reportlab, scipy, skl, statsmodels, weave Absent: atlas_pymvpa, cran-energy, elasticnet, glmnet, hcluster, lars, mass, nipy, nipy.neurospin, openopt, pprocess, pywt wp reconstruct fixed, rpy2, running ipython env, sg ge 0.6.4, sg ge 0.6.5, sg_fixedcachesize, shogun, shogun.krr, shogun.lightsvm, shogun.mpd, shogun.svmocas, shogun.svrlight Versions of critical externals: nibabel : 2.0.2 reportlab : 2.5 matplotlib : 1.1.1rc2 scipy : 0.10.1 ipython : 0.13.1 skl : 0.16.1 mdp : 3.4 numpy : 1.6.2 ctypes : 1.1.0 matplotlib : 1.1.1rc2 lxml : 2.3.2 nifti : failed to query due to "nifti is not a known dependency key." numpy : 1.6.2 pywt : 0.2.0 Matplotlib backend: TkAgg RUNTIME: PyMVPA Environment Variables: PYTHONPATH : ":/usr/lib/python2.7/lib-old:/usr/local/lib/python2.7/dist-packages:/data:/usr/lib/python2.7/lib-dynload:/usr/lib/python2.7/plat-linux2:/usr/lib/python2.7/dist-packages/gtk-2.0:/usr/lib/python2.7/dist-packages:/usr/lib/pymodules/python2.7:/usr/lib/python2.7/dist-packages/IPython/extensions:/usr/lib/python2.7:/usr/lib/python2.7/dist-packages/wx-2.8-gtk2-unicode:/usr/lib/python2.7/lib-tk:/usr/lib/python2.7/dist-packages/PIL" PyMVPA Runtime Configuration: [general] verbose = 1 [externals] have running ipython env = no have numpy = yes have scipy = yes have matplotlib = yes have lxml = yes have nibabel = yes have atlas_fsl = yes have atlas_pymvpa = no have cpickle = yes have cran-energy = no have ctypes = yes have elasticnet = no have glmnet = no have good scipy.stats.rdist = yes have good scipy.stats.rv_discrete.ppf = yes have griddata = yes have gzip = yes have h5py = yes have hcluster = no have ipython = yes have lars = no have liblapack.so = yes have pylab = yes have libsvm = yes have libsvm verbosity control = yes have mass = no have mdp = yes have mdp ge 2.4 = yes have nipy = no have nipy.neurospin = no have nose = yes have openopt = no have pprocess = no have pylab plottable = yes have pywt = yes have pywt wp reconstruct = yes have pywt wp reconstruct fixed = no have reportlab = yes have rpy2 = no have sg ge 0.6.4 = no have sg ge 0.6.5 = no have sg_fixedcachesize = no have shogun = no have shogun.krr = no have shogun.lightsvm = no have shogun.mpd = no have shogun.svmocas = no have shogun.svrlight = no have skl = yes have statsmodels = yes have weave = yes Process Information: Name: python State: R (running) Tgid: 13804 Pid: 13804 PPid: 13722 TracerPid: 0 Uid: 1000 1000 1000 1000 Gid: 1000 1000 1000 1000 FDSize: 256 Groups: 24 25 29 30 44 46 104 109 112 1000 VmPeak: 647452 kB VmSize: 647452 kB VmLck: 0 kB VmPin: 0 kB VmHWM: 107696 kB VmRSS: 107696 kB VmData: 125224 kB VmStk: 132 kB VmExe: 2396 kB VmLib: 64348 kB VmPTE: 1188 kB VmSwap: 0 kB Threads: 6 SigQ: 0/257267 SigPnd: 0000000000000000 ShdPnd: 0000000000000000 SigBlk: 0000000000000000 SigIgn: 0000000001001000 SigCgt: 0000000180000002 CapInh: 0000000000000000 CapPrm: 0000000000000000 CapEff: 0000000000000000 CapBnd: ffffffffffffffff Cpus_allowed: f Cpus_allowed_list: 0-3 Mems_allowed: 00000000,00000001 Mems_allowed_list: 0 voluntary_ctxt_switches: 426 nonvoluntary_ctxt_switches: 123 On Wed, Sep 13, 2017 at 9:21 AM, Yaroslav Halchenko <deb...@onerussian.com> wrote: > > On Wed, 13 Sep 2017, Anna Manelis wrote: > > > Dear PYMVPA developers, > > > I have installed mvpa2 on my Debian computer, but cannot import > > mvpa2.suite for some reason. > > > >>> import mvpa2.suite as mvpa2 > > > Traceback (most recent call last): > > Â File "<stdin>", line 1, in <module> > > Â File "/usr/lib/pymodules/python2.7/mvpa2/suite.py", line 98, in > > <module> > > Â Â Â from mvpa2.clfs.warehouse import * > > Â File "/usr/lib/pymodules/python2.7/mvpa2/clfs/warehouse.py", line > 357, > > in <module> > > Â Â Â sklPLSRegression = _skl_import('pls', 'PLSRegression') > > Â File "/usr/lib/pymodules/python2.7/mvpa2/clfs/warehouse.py", line > 313, > > in _skl_import > > Â Â Â submod_ = __import__('sklearn.%s' % submod, fromlist=[submod]) > > ImportError: No module named pls > > incompatibility with sklearn -- some API changes I guess we didn't spot > > could you Anna (howdoyoudobtw????) provide output of > > python -c 'import mvpa2; print mvpa2.wtf()' > > ? > -- > Yaroslav O. Halchenko > Center for Open Neuroscience http://centerforopenneuroscience.org > Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755 > Phone: +1 (603) 646-9834 Fax: +1 (603) 646-1419 > WWW: http://www.linkedin.com/in/yarik > > _______________________________________________ > Pkg-ExpPsy-PyMVPA mailing list > Pkg-ExpPsy-PyMVPA@lists.alioth.debian.org > http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/pkg-exppsy-pymvpa
_______________________________________________ Pkg-ExpPsy-PyMVPA mailing list Pkg-ExpPsy-PyMVPA@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/pkg-exppsy-pymvpa