Bug#1139502: marked as done (cmlxom: FTBFS: CMLBuilderTest.testBuildFile:156 OldNodeFactory validation expected:<...DOCTYPE root "null".[ at line 27, column 50]> but was:<...DOCTYPE root "null".[]>)

Debian Bug Tracking System Fri, 12 Jun 2026 04:07:18 -0700

Your message dated Fri, 12 Jun 2026 11:04:28 +0000
with message-id <[email protected]>
and subject line Bug#1139502: fixed in cmlxom 4.18-2
has caused the Debian Bug report #1139502,
regarding cmlxom: FTBFS: CMLBuilderTest.testBuildFile:156 OldNodeFactory 
validation expected:<...DOCTYPE root "null".[ at line 27, column 50]> but 
was:<...DOCTYPE root "null".[]>
to be marked as done.


This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
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misconfiguration somewhere. Please contact [email protected]
immediately.)


-- 
1139502: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139502
Debian Bug Tracking System
Contact [email protected] with problems

--- Begin Message ---

Package: src:cmlxom
Version: 4.18-1
Severity: serious
Tags: ftbfs forky sid

Dear maintainer:

During a rebuild of all packages in unstable, this package failed to build.

Below you will find the last part of the build log (probably the most
relevant part, but not necessarily). If required, the full build log
is available here:

https://people.debian.org/~sanvila/build-logs/202606/

About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.

If you cannot reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.

If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:cmlxom, so that this is still
visible in the BTS web page for this package.

Thanks.

--------------------------------------------------------------------------------
[...]
[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in 
org.xmlcml.cml.element.main.CMLJoinTest
[INFO] Running org.xmlcml.cml.element.main.CMLBuilderTest
[ERROR] Tests run: 3, Failures: 1, Errors: 0, Skipped: 0, Time elapsed: 0.007 s 
<<< FAILURE! - in org.xmlcml.cml.element.main.CMLBuilderTest
[ERROR] testBuildFile(org.xmlcml.cml.element.main.CMLBuilderTest)  Time 
elapsed: 0.007 s  <<< FAILURE!
junit.framework.ComparisonFailure: OldNodeFactory validation 
expected:<...DOCTYPE root "null".[ at line 27, column 50]> but was:<...DOCTYPE 
root "null".[]>
        at 
org.xmlcml.cml.element.main.CMLBuilderTest.testBuildFile(CMLBuilderTest.java:156)

[INFO] Running org.xmlcml.cml.element.main.CMLAtomTypeTest
[INFO] Tests run: 45, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - 
in org.xmlcml.cml.element.main.CMLAtomTypeTest
[INFO] Running org.xmlcml.cml.element.main.CMLBandListTest
[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in 
org.xmlcml.cml.element.main.CMLBandListTest
[INFO] Running org.xmlcml.cml.element.main.CMLMetadataTest
[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in 
org.xmlcml.cml.element.main.CMLMetadataTest
[INFO] Running org.xmlcml.cml.element.main.CMLDefinitionTest
[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in 
org.xmlcml.cml.element.main.CMLDefinitionTest
[INFO] Running org.xmlcml.cml.element.main.CMLBasisSetTest
[INFO] Tests run: 13, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - 
in org.xmlcml.cml.element.main.CMLBasisSetTest
[INFO] Running org.xmlcml.cml.element.main.CMLAngleTest
[INFO] Tests run: 15, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.016 s 
- in org.xmlcml.cml.element.main.CMLAngleTest
[INFO] Running org.xmlcml.cml.element.main.CMLTorsionTest
[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in 
org.xmlcml.cml.element.main.CMLTorsionTest
[INFO] Running org.xmlcml.cml.element.main.CMLSymmetryTest
[INFO] Tests run: 18, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.064 s 
- in org.xmlcml.cml.element.main.CMLSymmetryTest
[INFO] Running org.xmlcml.cml.element.main.CMLAbundanceTest
[INFO] Tests run: 34, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 s 
- in org.xmlcml.cml.element.main.CMLAbundanceTest
[INFO] Running org.xmlcml.cml.element.main.ElementsTest
Index 2 out of bounds for length 2
[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s 
- in org.xmlcml.cml.element.main.ElementsTest
[INFO] Running org.xmlcml.cml.element.main.CMLArrayListTest
[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.011 s 
- in org.xmlcml.cml.element.main.CMLArrayListTest
[INFO] Running org.xmlcml.cml.element.main.CMLTableTest
[INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.011 s 
- in org.xmlcml.cml.element.main.CMLTableTest
[INFO] Running org.xmlcml.cml.element.main.CMLCrystalTest
[INFO] Tests run: 19, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.02 s 
- in org.xmlcml.cml.element.main.CMLCrystalTest
[INFO] Running org.xmlcml.cml.element.lite.CMLArrayTest
[INFO] Tests run: 51, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.039 s 
- in org.xmlcml.cml.element.lite.CMLArrayTest
[INFO] Running org.xmlcml.cml.element.lite.CMLPeakListTest
[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in 
org.xmlcml.cml.element.lite.CMLPeakListTest
[INFO] Running org.xmlcml.cml.element.lite.CMLAtomTest
[INFO] Tests run: 39, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.015 s 
- in org.xmlcml.cml.element.lite.CMLAtomTest
[INFO] Running org.xmlcml.cml.element.lite.CMLMoleculeTest
[INFO] Tests run: 64, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.032 s 
- in org.xmlcml.cml.element.lite.CMLMoleculeTest
[INFO] Running org.xmlcml.cml.element.lite.CMLBondArrayTest
[INFO] Tests run: 13, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 s 
- in org.xmlcml.cml.element.lite.CMLBondArrayTest
[INFO] Running org.xmlcml.cml.element.lite.CMLPeakStructureTest
[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in 
org.xmlcml.cml.element.lite.CMLPeakStructureTest
[INFO] Running org.xmlcml.cml.element.lite.CMLPeakTest
[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in 
org.xmlcml.cml.element.lite.CMLPeakTest
[INFO] Running org.xmlcml.cml.element.lite.CMLBondStereoTest
[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in 
org.xmlcml.cml.element.lite.CMLBondStereoTest
[INFO] Running org.xmlcml.cml.element.lite.CMLPropertyTest
[INFO] Tests run: 11, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 s 
- in org.xmlcml.cml.element.lite.CMLPropertyTest
[INFO] Running org.xmlcml.cml.element.lite.CMLBondTest
[INFO] Tests run: 34, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.021 s 
- in org.xmlcml.cml.element.lite.CMLBondTest
[INFO] Running org.xmlcml.cml.element.lite.CMLFormulaTest
[INFO] Tests run: 53, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.088 s 
- in org.xmlcml.cml.element.lite.CMLFormulaTest
[INFO] Running org.xmlcml.cml.element.lite.CMLScalarTest
[WARNING] Tests run: 31, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 
0.023 s - in org.xmlcml.cml.element.lite.CMLScalarTest
[INFO] Running org.xmlcml.cml.element.lite.CMLAtomParityTest
[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in 
org.xmlcml.cml.element.lite.CMLAtomParityTest
[INFO] Running org.xmlcml.cml.element.lite.CMLAtomArrayTest
[INFO] Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.015 s 
- in org.xmlcml.cml.element.lite.CMLAtomArrayTest
[INFO] Running org.xmlcml.molutil.test.ChemicalElementTest
[INFO] Tests run: 33, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s 
- in org.xmlcml.molutil.test.ChemicalElementTest
[INFO] 
[INFO] Results:
[INFO] 
[ERROR] Failures: 
[ERROR]   CMLBuilderTest.testBuildFile:156 OldNodeFactory validation 
expected:<...DOCTYPE root "null".[ at line 27, column 50]> but was:<...DOCTYPE 
root "null".[]>
[INFO] 
[ERROR] Tests run: 1235, Failures: 1, Errors: 0, Skipped: 2
[INFO] 
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time:  33.393 s
[INFO] Finished at: 2026-06-08T22:06:53Z
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal 
org.apache.maven.plugins:maven-surefire-plugin:2.22.3:test (default-test) on 
project cmlxom: There are test failures.
[ERROR] 
[ERROR] Please refer to /<<PKGBUILDDIR>>/target/surefire-reports for the 
individual test results.
[ERROR] Please refer to dump files (if any exist) [date].dump, 
[date]-jvmRun[N].dump and [date].dumpstream.
[ERROR] -> [Help 1]
[ERROR] 
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e 
switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR] 
[ERROR] For more information about the errors and possible solutions, please 
read the following articles:
[ERROR] [Help 1] 
http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
dh_auto_test: error: /usr/lib/jvm/default-java/bin/java -noverify -cp 
/usr/share/maven/boot/plexus-classworlds-2.x.jar -Dmaven.home=/usr/share/maven 
-Dmaven.multiModuleProjectDirectory=/<<PKGBUILDDIR>> 
-Dclassworlds.conf=/etc/maven/m2-debian.conf 
org.codehaus.plexus.classworlds.launcher.Launcher 
-s/etc/maven/settings-debian.xml -Ddebian.dir=/<<PKGBUILDDIR>>/debian 
-Dmaven.repo.local=/<<PKGBUILDDIR>>/debian/maven-repo --batch-mode test 
returned exit code 1
make: *** [debian/rules:4: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess failed with exit 
status 2
--------------------------------------------------------------------------------

--- End Message ---

--- Begin Message ---

Source: cmlxom
Source-Version: 4.18-2
Done: Andrius Merkys <[email protected]>

We believe that the bug you reported is fixed in the latest version of
cmlxom, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andrius Merkys <[email protected]> (supplier of updated cmlxom package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Fri, 12 Jun 2026 06:43:50 -0400
Source: cmlxom
Architecture: source
Version: 4.18-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Java Maintainers 
<[email protected]>
Changed-By: Andrius Merkys <[email protected]>
Closes: 1139502
Changes:
 cmlxom (4.18-2) unstable; urgency=medium
 .
   * Depend on libxom-java >= 1.4.4 (Closes: #1139502)
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--- End Message ---

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Bug#1139502: marked as done (cmlxom: FTBFS: CMLBuilderTest.testBuildFile:156 OldNodeFactory validation expected:<...DOCTYPE root "null".[ at line 27, column 50]> but was:<...DOCTYPE root "null".[]>)

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