Thanks Andrey. I actually tried that first to validate SCM integration isn't really an issue 1. Create or import a project 2. Pick a folder (that will be turned into a project later, so it's good if it's a project), mark is a derived 3. Try to edit a File => Got a pop-up "this file is derived, do you want to edit it?", which is actually a good thingz => Got EGit staging the file anyway (EGit prefers trusting the .gitignore) and mark the file and folder as modified 4. Open the folder as project 5. Edit another file => Everything file => EGit stages the change and marks the file and folder as modified
So to me, this workflow looks totally desirable for cases of nested projects: it warns users when editing the "non-leaf" duplicate resource, it still makes EGit works well, it hides duplicated resources in many views...
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