Name : paml Relocations: (not relocatable)
Version : 3.14 Vendor: Penguin Liberation Front
Release : 0.beta3.2plf Build Date: Fri 27 Jan 2006
12:14:47 AM CET
Install Date: (not installed) Build Host: baader
Group : Sciences/Biology Source RPM: (none)
Size : 1010593 License: Freeware
Signature : (none)
Packager : Guillaume Rousse <[EMAIL PROTECTED]>
URL : http://abacus.gene.ucl.ac.uk/software/paml.html
Summary : Phylogenetic analyses of DNA or protein sequences using maximum
likelihood
Description :
PAML (for Phylogentic Analysis by Maximum Likelihood) contains a few
programs for model fitting and phylogenetic tree reconstruction using
nucleotide or amino-acid sequence data. PAML is distributed free of
charge for academic use only.
This package is in PLF because of its non-free license.
---------------
Guillaume Rousse <[EMAIL PROTECTED]> 3.14-0.beta3.2plf
- %{1}plf
- spec cleanup
- fix doc file encoding
---------------
---------------
Index: paml.spec
===================================================================
RCS file: /home/projects/plf/cvs/SPECS/non-free/paml/paml.spec,v
retrieving revision 1.1
diff -u -r1.1 paml.spec
--- paml.spec 1 Oct 2004 12:07:54 -0000 1.1
+++ paml.spec 27 Jan 2006 17:36:30 -0000
@@ -1,7 +1,7 @@
%define name paml
%define version 3.14
%define beta beta3
-%define release 0.%{beta}.1plf
+%define release %mkrel 0.%{beta}.2
Name: %{name}
Version: %{version}
@@ -11,7 +11,7 @@
Source:
ftp://abacus.gene.ucl.ac.uk/pub/paml/%{name}%{version}%{beta}.tar.bz2
License: Freeware
Group: Sciences/Biology
-BuildRoot: %{_tmppath}/%{name}-root
+BuildRoot: %{_tmppath}/%{name}-%{version}
%description
PAML (for Phylogentic Analysis by Maximum Likelihood) contains a few
@@ -23,25 +23,31 @@
%prep
%setup -q -n %{name}%{version}
+find . -type f | xargs perl -pi -e 'BEGIN {exit unless -T $ARGV[0];} tr/\r//d;'
%build
cd src
%make -f Makefile.UNIX CFLAGS="$RPM_OPT_FLAGS"
%install
-rm -rf $RPM_BUILD_ROOT
+rm -rf %{buildroot}
cd src
-install -m 755 -d $RPM_BUILD_ROOT%{_bindir}
-install -m 755 baseml basemlg chi2 codeml evolver mcmctree pamp yn00
$RPM_BUILD_ROOT%{_bindir}
+install -m 755 -d %{buildroot}%{_bindir}
+install -m 755 baseml basemlg chi2 codeml evolver mcmctree pamp yn00
%{buildroot}%{_bindir}
%files
-%defattr(-, root, root)
+%defattr(-,root,root)
+%doc *.txt *.aa *.dat *.nuc *.trees *.ctl doc examples paupblock paupend
paupstart
%{_bindir}/*
-%doc *.trees GeneticCode.txt *.dat README.txt *.nuc *.ctl doc examples
paupblock paupend paupstart *.aa
%clean
-rm -rf $RPM_BUILD_ROOT
+rm -rf %{buildroot}
%changelog
+* Fri Jan 27 2006 Guillaume Rousse <[EMAIL PROTECTED]> 3.14-0.beta3.2plf
+- %mkrel
+- spec cleanup
+- fix doc file encoding
+
* Fri Oct 01 2004 Guillaume Rousse <[EMAIL PROTECTED]> 3.14-0.beta3.1plf
- first plf release, based on a spec from Bent Terp <[EMAIL PROTECTED]>
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