Actually, the /usr/local/lib/libxml2.so.2.6.30 would not likely to have
been installed by apt/dpkg but likely by some tarball installation of
some package instead. The problem with tarball installations like this
is that the shell typically uses files in /usr/local before /usr and in
this case, it is a problem.

And the TLS errors would appear to be related to a VNC server starting
up...maybe normal, may not be normal...I don't know.

web servers aren't going to log in a ~/.xsession-errors anyway.

The openoffice.desktop errors are because launchers for a version that
is no longer installed are in some panel on your desktop. Remove
launchers, error goes away.

Craig

On Mon, 2009-06-22 at 19:06 -0700, Joseph Sinclair wrote:
> The missing file errors are leftovers.  Something in your system is still 
> referencing the old OO.o version 2.4, and the new 3.0 version changed the 
> filenames.  You can safely ignore that (or hunt down what's referencing the 
> old files and fix it, if you're adventurous).
> libxml2 is used by a lot of software, don't remove it.
> Stick with apt and dpkg (APT is really a frontend for dpkg) as much as 
> possible, it's easy to get borked when you go outside the fence...
> You can remove the renamed xml2lib.so.2.6.30.  It's borken, and is just 
> wasting space now.
> The metacity missing file thing 
> (/home/mark/.config/metacity/sessions/default0.ms: Failed to open file) is 
> not uncommon, you simply don't have a saved session there.  Metacity will 
> generally recover just fine and fix itself on that.
> AFAICT the authentication warnings are about SSL stuff (are you running a web 
> server?).  I don't think those are a problem, but I'll defer to the more 
> security-skilled on the list in this regard.
> 
> Mark Phillips wrote:
> > Joseph,
> > 
> > Thanks for the suggestions. When I reinstalled libxml2 there were no errors.
> > When I installed the librsvg2 apps, librsvg2-2 and librsvg2-common were
> > already the latest versions and librsvg2-bin was installed. After a reboot,
> > I still had the libxml2 errors in .xsession-errors.
> > 
> > I searched for libxml2.so, and the 2.6 version was still present. After some
> > googling on this error, It seems that vmware installed it (from tar.gz and
> > not apt), so it was not being maintained by apt. I removed vmware completely
> > but /usr/lib/libxml2.so.2.6.30 was still present. So, I renamed it
> > xml2lib.so.2.6.30 and reinstalled libxm2. After a reboot, my desktop icons
> > came back. Can I safely remove this file? How would I find out if another
> > program that I have not started still needs it? 99.99% of all my programs
> > are installed with apt; the vmware install was unusual.
> > 
> > I still have these errors in .xsession-errors:
> > /etc/gdm/Xsession: Beginning session setup...
> > SESSION_MANAGER=local/narwhale:@
> > /tmp/.ICE-unix/4441,unix/narwhale:/tmp/.ICE-unix/4441
> > Window manager warning: Failed to read saved session file
> > /home/mark/.config/metacity/sessions/default0.ms: Failed to open file
> > '/home/mark/.config/metacity/sessions/default0.ms': No such file or
> > directory
> > GNOME_KEYRING_SOCKET=/tmp/keyring-nSmW8a/socket
> > SSH_AUTH_SOCK=/tmp/keyring-nSmW8a/socket.ssh
> > 21/06/2009 08:22:45 AM Autoprobing TCP port
> > 21/06/2009 08:22:45 AM Autoprobing selected port 5900
> > 21/06/2009 08:22:45 AM Advertising security type: 'TLS' (18)
> > 21/06/2009 08:22:45 AM Advertising authentication type: 'No Authentication'
> > (1)
> > 21/06/2009 08:22:45 AM Advertising security type: 'No Authentication' (1)
> > 
> > ** (nautilus:4681): WARNING **: Unable to add monitor: Not supported
> > Unable to open desktop file
> > /usr/share/applications/openoffice.org2.4-writer.desktop for panel launcher:
> > No such file or directory
> > Unable to open desktop file
> > /usr/share/applications/openoffice.org2.4-calc.desktop for panel launcher:
> > No such file or directory
> > Unable to open desktop file
> > /usr/share/applications/openoffice.org2.4-base.desktop for panel launcher:
> > No such file or directory
> > ESC[31;01merror: No system tray detected on this system. Unable to start,
> > exiting. ESC[0m
> > Window manager warning: Invalid WM_TRANSIENT_FOR window 0x220000e specified
> > for 0x220000c (HPLIP Stat).
> > 
> > ESC[01mHP Linux Imaging and Printing System (ver. 1.7.4a)ESC[0m
> > ESC[01mSystem Tray Status Service ver. 2.0ESC[0m
> > 
> > Copyright (c) 2001-9 Hewlett-Packard Development Company, LP
> > This software comes with ABSOLUTELY NO WARRANTY.
> > This is free software, and you are welcome to distribute it
> > under certain conditions. See COPYING file for more details.
> > 
> > Should I be concerned about the warnings and missing authentication? How do
> > I fix them?
> > 
> > Thanks for all your help!!!!
> > 
> > Mark
> > 
> > On Sat, Jun 20, 2009 at 11:40 PM, Joseph Sinclair <plug-discuss...@stcaz.net
> >> wrote:
> > 
> >> You have a couple problems that I can see from this:
> >> 1) libxml is horked.  This is pretty bad (because of all the xml in the
> >> Gnome configs), but can be fixed
> >> 2) Nautilus is failing to start due to missing core library dependencies,
> >> this is what's causing your no-desktop issues.
> >>
> >> try the following:
> >> sudo apt-get install --reinstall libxml2
> >> sudo apt-get install librsvg2-2 librsvg2-common librsvg2-bin
> >>
> >> that may get you to a more stable state.
> >>
> >> It's possible that you're just a bit too far out in front of the devs with
> >> Squeeze, so you may have to wait a bit for them to get librsvg-2 properly
> >> packaged for you before Gnome will work again...
> >>
> >> Mark Phillips wrote:
> >>> Joseph,
> >>>
> >>> This is in .xsession-errors:
> >>> /etc/gdm/Xsession: Beginning session setup...
> >>> SESSION_MANAGER=local/narwhale:@
> >>> /tmp/.ICE-unix/4168,unix/narwhale:/tmp/.ICE-unix/4168
> >>> 1245556817.745420 Session manager: disconnected...
> >>> Warning: program compiled against libxml 207 using older 206
> >>> Warning: program compiled against libxml 207 using older 206
> >>> Warning: program compiled against libxml 207 using older 206
> >>> Window manager warning: Failed to read saved session file
> >>> /home/mark/.config/metacity/sessions/default0.ms: Failed to open file
> >>> '/home/mark/.config/metacity/sessions/default0.ms': No such file or
> >>> directory
> >>> Warning: program compiled against libxml 207 using older 206
> >>> Warning: program compiled against libxml 207 using older 206
> >>> Warning: program compiled against libxml 207 using older 206
> >>> Warning: program compiled against libxml 207 using older 206
> >>> GNOME_KEYRING_SOCKET=/tmp/keyring-u7nyMw/socket
> >>> SSH_AUTH_SOCK=/tmp/keyring-u7nyMw/socket.ssh
> >>> Warning: program compiled against libxml 207 using older 206
> >>> 20/06/2009 09:00:31 PM Autoprobing TCP port
> >>> 20/06/2009 09:00:31 PM Autoprobing selected port 5900
> >>> 20/06/2009 09:00:31 PM Advertising security type: 'TLS' (18)
> >>> 20/06/2009 09:00:31 PM Advertising authentication type: 'No
> >> Authentication'
> >>> (1)
> >>> 20/06/2009 09:00:31 PM Advertising security type: 'No Authentication' (1)
> >>>
> >>> ** (nautilus:4409): WARNING **: Unable to add monitor: Not supported
> >>> nautilus: symbol lookup error: /usr/lib/librsvg-2.so.2: undefined symbol:
> >>> xmlNewEntity
> >>>
> >>> (nautilus:4417): Unique-DBus-WARNING **: Error while sending message:
> >>> Message did not receive a reply (timeout by message bus)
> >>> Unable to open desktop file
> >>> /usr/share/applications/openoffice.org2.4-writer.desktop for panel
> >> launcher:
> >>> No such file or directory
> >>> Unable to open desktop file
> >>> /usr/share/applications/openoffice.org2.4-calc.desktop for panel
> >> launcher:
> >>> No such file or directory
> >>> Unable to open desktop file
> >>> /usr/share/applications/openoffice.org2.4-base.desktop for panel
> >> launcher:
> >>> No such file or directory
> >>> Warning: program compiled against libxml 207 using older 206
> >>> epiphany-browser: symbol lookup error: /usr/lib/librsvg-2.so.2: undefined
> >>> symbol: xmlNewEntity
> >>> Warning: program compiled against libxml 207 using older 206
> >>> epiphany-browser: symbol lookup error: /usr/lib/librsvg-2.so.2: undefined
> >>> symbol: xmlNewEntity
> >>> Warning: program compiled against libxml 207 using older 206
> >>> Warning: program compiled against libxml 207 using older 206
> >>> epiphany-browser: symbol lookup error: /usr/lib/librsvg-2.so.2: undefined
> >>> symbol: xmlNewEntity
> >>> nsHeaderInfo: registerSelf called!
> >>> nsHeaderInfo: registerSelf called!
> >>>
> >>> compiz was not installed for some reason, so I tried installing it, but
> >> no
> >>> change.
> >>> It appears that I have two versions of libxml2 installed -
> >>> /usr/lib/libxml2.so.2.7.3
> >>> /usr/local/lib/libxml2.so.2.6.30
> >>> but dpkg says I only have one:
> >>> narwhale:/home/mark# dpkg -l libxml2*
> >>> Desired=Unknown/Install/Remove/Purge/Hold
> >>> |
> >>>
> >> Status=Not/Inst/Cfg-files/Unpacked/Failed-cfg/Half-inst/trig-aWait/Trig-pend
> >>> |/ Err?=(none)/Hold/Reinst-required/X=both-problems (Status,Err:
> >>> uppercase=bad)
> >>> ||/ Name Version Description
> >>>
> >> +++-=========================-=========================-==================================================================
> >>> ii libxml2 2.7.3.dfsg-1 GNOME XML library
> >>> un libxml2-dev <none> (no description available)
> >>> un libxml2-doc <none> (no description available)
> >>> un libxml2-headers <none> (no description available)
> >>> un libxml2-python2.3 <none> (no description available)
> >>> ii libxml2-utils 2.7.3.dfsg-1 XML utilities
> >>> narwhale:/home/mark#
> >>>
> >>> I remember several of those warning about libxml during apt-get upgrade.
> >> I
> >>> don't know if this is the problem, but one of the errors in
> >> .xsession-errors
> >>> mentions an unknown xml entry.
> >>> I don't know how to "blow away" my gconf or gnome configuration as
> >> suggested
> >>> by James, nor do I understand if that will help.
> >>>
> >>> Any further suggestions would be greatly appreciated!
> >>>
> >>> Mark
> >>>
> >>>
> >>> On Sat, Jun 20, 2009 at 7:21 PM, Joseph Sinclair
> >>> <plug-discuss...@stcaz.net>wrote:
> >>>
> >>>> From the sound of it Nautilus is not starting or failing on startup.
> >>>> Have you looked at .xsession-errors?  There may be something there about
> >> a
> >>>> dbus failure.
> >>>> Try (from a command-line if you can get a terminal started) running
> >>>> nautilus directly, if that "fixes" the problem, then you know for
> >> certain
> >>>> what's failing (you might also get debug output that can help tell you
> >> why).
> >>>> If you can't start Nautilus, try disabling compiz, sometimes that causes
> >>>> problems during upgrades.
> >>>> I had a similar problem in a stable release, and I had some luck with
> >> (via
> >>>> command-line) disabling compiz and dropping back to a simpler graphics
> >>>> driver (kernel drivers first, VESA if those fail).  You might have some
> >> luck
> >>>> trying that.
> >>>> If all else fails, you might need to blow away your gnome configuration
> >>>> files (back them up first!) as suggested by James.
> >>>>
> >>>>
> >>>> Mark Phillips wrote:
> >>>>> I am running Debian testing on my laptop. Just completed a routine
> >>>> apt-get
> >>>>> update apt-get upgrade, and now all my desktop icons are gone and every
> >>>> time
> >>>>> I access the menus (Applications, Places, System) the upper and lower
> >>>> menu
> >>>>> bars disappear and then come back. I am writing this email in a browser
> >>>>> window, so once an application is launched it seems to work OK.
> >>>>>
> >>>>> I have no idea where to start debugging this problem. Any suggestions
> >> are
> >>>>> welcome!
> >>>>>
> >>>>> Mark
> >>>>>
> >>>>> P.S. I am running gnome, not KDE. Also, I cannot right click on the
> >>>> desktop
> >>>>> - nothing happens.
> >>>>>
> >>>>>
> >>>>>
> >>>>>
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