On Fri Aug 21, 2026 at 8:38 PM CEST, Martin Reindl wrote:
> Diff below updates hdf5 to 2.2.0.
>
> Note that upstream has dropped the autotools build, so this is
> now cmake only.
>
> I have compile tested most of the following direct users of hdf5:
>
> cad/freecad
> [...]
>
> Any additional testing (and of course OKs) is appreciated.
There is a problem with patching (on arm64):
...
===> Installing gcc-16.1.0p11 from /usr/ports/packages/aarch64/all/
gcc-16.1.0p11: ok
===> Returning to build of hdf5-2.2.0
===> hdf5-2.2.0 depends on: gcc->=16,<17 -> gcc-16.1.0p11
===> hdf5-2.2.0 depends on: gfortran->=16,<17 - not found
===> Verifying install for gfortran->=16,<17 in lang/gcc/16
===> gfortran-16.1.0p11 depends on: gcc->=16,<17 -> gcc-16.1.0p11
===> Verifying specs: c gmp m mpc mpfr z
===> found c.104.0 gmp.11.1 m.10.1 mpc.1.1 mpfr.2.2 z.7.2
===> Installing gfortran-16.1.0p11 from /usr/ports/packages/aarch64/all/
gfortran-16.1.0p11: ok
===> Returning to build of hdf5-2.2.0
===> hdf5-2.2.0 depends on: gfortran->=16,<17 -> gfortran-16.1.0p11
===> hdf5-2.2.0 depends on: libaec-* -> libaec-1.1.4
===> hdf5-2.2.0 depends on: gcc-libs->=16,<17 -> gcc-libs-16.1.0p9
===> Verifying specs: c m c++ c++abi pthread z aec sz gfortran>=11
===> found c.104.0 m.10.1 c++.13.0 c++abi.10.0 pthread.28.1 z.7.2 aec.0.0
sz.0.0 gfortran.11.0
===> Extracting for hdf5-2.2.0
===> Patching for hdf5-2.2.0
===> Applying OpenBSD patch patch-m4_aclocal_fc_f90
Hmm... Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|Already fixed upstream.
|
|Index: m4/aclocal_fc.f90
|--- m4/aclocal_fc.f90.orig
|+++ m4/aclocal_fc.f90
--------------------------
File to patch:
No file found--skip this patch? [y]
Should the patches be skipped/removed?
Without the patches:
The following tests FAILED:
30 - H5TEST-dsets (Failed)
2704 - FORTRAN_testhdf5_fortran (Failed)
2705 - FORTRAN_testhdf5_fortran_1_8 (Failed)
Errors while running CTest
Output from these tests are in:
/usr/ports/pobj/hdf5-2.2.0/build-aarch64/Testing/Temporary/LastTest.log
Use "--rerun-failed --output-on-failure" to re-run the failed cases verbosely.
*** Error 8 in . (/usr/ports/devel/cmake/cmake.port.mk:53 'do-test': @cd
/usr/ports/pobj/hdf5-2.2.0/build-aarch64 && exec /usr/bin/env -i LI...)
*** Error 2 in . (/usr/ports/infrastructure/mk/bsd.port.mk:3108
'/usr/ports/pobj/hdf5-2.2.0/build-aarch64/.test_done': @cd /usr/ports/math/h...)
*** Error 2 in /usr/ports/math/hdf5
(/usr/ports/infrastructure/mk/bsd.port.mk:2722 'test': @lock=hdf5-2.2.0;
export _LOCKS_HELD=" hdf5-2.2....)
Marco
