[update] math/py-networkx to 2.7.1

Lucas Raab Fri, 05 Apr 2024 20:53:49 -0700

Hello,

networkx is getting a bit long in the tooth so let's try to bring it up
to the next version. Tests pass, but downstream users have any
regressions?


CC maintainers of impacted ports:
devel/angr/py-angr: jasper@
math/py-scikit-image: pirofti@
security/knockpy: rsadowski@
textproc/hotdoc: ajacoutot@

Thanks,
Lucas

diff refs/heads/master refs/heads/networkx
commit - caf423687cd5ed0af97bb28f404e36bc7a6d0e44
commit + e43447f76e7f62a80c51674d54fdcd2e7582a8a5
blob - 7314524156bf7d3fded4c4f2c1c0936c29dea001
blob + 9a7a617deed832d9b4b37310cecf2db08f50b12e
--- math/py-networkx/Makefile
+++ math/py-networkx/Makefile
@@ -1,9 +1,8 @@
 COMMENT =              module for creating and manipulating graphs and networks
 
-MODPY_EGG_VERSION =    2.6.2
+MODPY_EGG_VERSION =    2.7.1
 DISTNAME =             networkx-${MODPY_EGG_VERSION}
 PKGNAME =              py-${DISTNAME}
-REVISION =             2
 
 CATEGORIES =           math
 
@@ -21,6 +20,6 @@ FLAVOR =              python3
 
 RUN_DEPENDS =          devel/py-decorator${MODPY_FLAVOR}
 
-TEST_DEPENDS =         devel/py-nose${MODPY_FLAVOR}
+TEST_DEPENDS =         devel/py-test-cov${MODPY_FLAVOR}
 
 .include <bsd.port.mk>
blob - 6dde6c14a50ea31dbadddf6806e6de4e90d18725
blob + b5b989993b8c2a67673e0c456a72ca10c5ebe54b
--- math/py-networkx/distinfo
+++ math/py-networkx/distinfo
@@ -1,2 +1,2 @@
-SHA256 (networkx-2.6.2.tar.gz) = IwbxlQzncsWlmlf1SG1Zu5yrmEl8RfxJy8RawN7BGbs=
-SIZE (networkx-2.6.2.tar.gz) = 1842077
+SHA256 (networkx-2.7.1.tar.gz) = 0RlLp1Pl7tB83s0dI8XNejx3IJm9jb0v6jZniM9N57o=
+SIZE (networkx-2.7.1.tar.gz) = 1923431
blob - 811420d40c39f8406ae004530cd6dd9aa148b7ce
blob + 10c83610039f6519aad9f938db2c4c9e366a461e
--- math/py-networkx/pkg/PLIST
+++ math/py-networkx/pkg/PLIST
@@ -18,6 +18,8 @@ lib/python${MODPY_VERSION}/site-packages/networkx/${MO
 
lib/python${MODPY_VERSION}/site-packages/networkx/${MODPY_PYCACHE}convert_matrix.${MODPY_PYC_MAGIC_TAG}pyc
 
lib/python${MODPY_VERSION}/site-packages/networkx/${MODPY_PYCACHE}exception.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION}
 
lib/python${MODPY_VERSION}/site-packages/networkx/${MODPY_PYCACHE}exception.${MODPY_PYC_MAGIC_TAG}pyc
+lib/python${MODPY_VERSION}/site-packages/networkx/${MODPY_PYCACHE}lazy_imports.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION}
+lib/python${MODPY_VERSION}/site-packages/networkx/${MODPY_PYCACHE}lazy_imports.${MODPY_PYC_MAGIC_TAG}pyc
 
lib/python${MODPY_VERSION}/site-packages/networkx/${MODPY_PYCACHE}relabel.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION}
 
lib/python${MODPY_VERSION}/site-packages/networkx/${MODPY_PYCACHE}relabel.${MODPY_PYC_MAGIC_TAG}pyc
 lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/
@@ -475,11 +477,8 @@ lib/python${MODPY_VERSION}/site-packages/networkx/algo
 
lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/coloring/${MODPY_PYCACHE}equitable_coloring.${MODPY_PYC_MAGIC_TAG}pyc
 
lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/coloring/${MODPY_PYCACHE}greedy_coloring.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION}
 
lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/coloring/${MODPY_PYCACHE}greedy_coloring.${MODPY_PYC_MAGIC_TAG}pyc
-lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/coloring/${MODPY_PYCACHE}greedy_coloring_with_interchange.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION}
-lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/coloring/${MODPY_PYCACHE}greedy_coloring_with_interchange.${MODPY_PYC_MAGIC_TAG}pyc
 
lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/coloring/equitable_coloring.py
 
lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/coloring/greedy_coloring.py
-lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/coloring/greedy_coloring_with_interchange.py
 lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/coloring/tests/
 
lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/coloring/tests/__init__.py
 
${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/coloring/tests/${MODPY_PYCACHE}/
@@ -506,6 +505,8 @@ lib/python${MODPY_VERSION}/site-packages/networkx/algo
 
lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/community/${MODPY_PYCACHE}kernighan_lin.${MODPY_PYC_MAGIC_TAG}pyc
 
lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/community/${MODPY_PYCACHE}label_propagation.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION}
 
lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/community/${MODPY_PYCACHE}label_propagation.${MODPY_PYC_MAGIC_TAG}pyc
+lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/community/${MODPY_PYCACHE}louvain.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION}
+lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/community/${MODPY_PYCACHE}louvain.${MODPY_PYC_MAGIC_TAG}pyc
 
lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/community/${MODPY_PYCACHE}lukes.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION}
 
lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/community/${MODPY_PYCACHE}lukes.${MODPY_PYC_MAGIC_TAG}pyc
 
lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/community/${MODPY_PYCACHE}modularity_max.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION}
@@ -518,6 +519,7 @@ lib/python${MODPY_VERSION}/site-packages/networkx/algo
 
lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/community/kclique.py
 
lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/community/kernighan_lin.py
 
lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/community/label_propagation.py
+lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/community/louvain.py
 lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/community/lukes.py
 
lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/community/modularity_max.py
 
lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/community/quality.py
@@ -536,6 +538,8 @@ lib/python${MODPY_VERSION}/site-packages/networkx/algo
 
lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/community/tests/${MODPY_PYCACHE}test_kernighan_lin.${MODPY_PYC_MAGIC_TAG}pyc
 
lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/community/tests/${MODPY_PYCACHE}test_label_propagation.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION}
 
lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/community/tests/${MODPY_PYCACHE}test_label_propagation.${MODPY_PYC_MAGIC_TAG}pyc
+lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/community/tests/${MODPY_PYCACHE}test_louvain.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION}
+lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/community/tests/${MODPY_PYCACHE}test_louvain.${MODPY_PYC_MAGIC_TAG}pyc
 
lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/community/tests/${MODPY_PYCACHE}test_lukes.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION}
 
lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/community/tests/${MODPY_PYCACHE}test_lukes.${MODPY_PYC_MAGIC_TAG}pyc
 
lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/community/tests/${MODPY_PYCACHE}test_modularity_max.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION}
@@ -549,6 +553,7 @@ lib/python${MODPY_VERSION}/site-packages/networkx/algo
 
lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/community/tests/test_kclique.py
 
lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/community/tests/test_kernighan_lin.py
 
lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/community/tests/test_label_propagation.py
+lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/community/tests/test_louvain.py
 
lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/community/tests/test_lukes.py
 
lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/community/tests/test_modularity_max.py
 
lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/community/tests/test_quality.py
@@ -848,17 +853,6 @@ lib/python${MODPY_VERSION}/site-packages/networkx/algo
 
lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/node_classification/${MODPY_PYCACHE}utils.${MODPY_PYC_MAGIC_TAG}pyc
 
lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/node_classification/hmn.py
 
lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/node_classification/lgc.py
-lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/node_classification/tests/
-lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/node_classification/tests/__init__.py
-${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/node_classification/tests/${MODPY_PYCACHE}/
-lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/node_classification/tests/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION}
-lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/node_classification/tests/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc
-lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/node_classification/tests/${MODPY_PYCACHE}test_harmonic_function.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION}
-lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/node_classification/tests/${MODPY_PYCACHE}test_harmonic_function.${MODPY_PYC_MAGIC_TAG}pyc
-lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/node_classification/tests/${MODPY_PYCACHE}test_local_and_global_consistency.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION}
-lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/node_classification/tests/${MODPY_PYCACHE}test_local_and_global_consistency.${MODPY_PYC_MAGIC_TAG}pyc
-lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/node_classification/tests/test_harmonic_function.py
-lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/node_classification/tests/test_local_and_global_consistency.py
 
lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/node_classification/utils.py
 lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/non_randomness.py
 lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/operators/
@@ -1018,6 +1012,10 @@ lib/python${MODPY_VERSION}/site-packages/networkx/algo
 
lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/tests/${MODPY_PYCACHE}test_mis.${MODPY_PYC_MAGIC_TAG}pyc
 
lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/tests/${MODPY_PYCACHE}test_moral.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION}
 
lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/tests/${MODPY_PYCACHE}test_moral.${MODPY_PYC_MAGIC_TAG}pyc
+lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/tests/${MODPY_PYCACHE}test_node_classification.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION}
+lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/tests/${MODPY_PYCACHE}test_node_classification.${MODPY_PYC_MAGIC_TAG}pyc
+lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/tests/${MODPY_PYCACHE}test_node_classification_deprecations.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION}
+lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/tests/${MODPY_PYCACHE}test_node_classification_deprecations.${MODPY_PYC_MAGIC_TAG}pyc
 
lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/tests/${MODPY_PYCACHE}test_non_randomness.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION}
 
lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/tests/${MODPY_PYCACHE}test_non_randomness.${MODPY_PYC_MAGIC_TAG}pyc
 
lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/tests/${MODPY_PYCACHE}test_planar_drawing.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION}
@@ -1089,6 +1087,8 @@ lib/python${MODPY_VERSION}/site-packages/networkx/algo
 
lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/tests/test_max_weight_clique.py
 lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/tests/test_mis.py
 
lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/tests/test_moral.py
+lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/tests/test_node_classification.py
+lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/tests/test_node_classification_deprecations.py
 
lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/tests/test_non_randomness.py
 
lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/tests/test_planar_drawing.py
 
lib/python${MODPY_VERSION}/site-packages/networkx/algorithms/tests/test_planarity.py
@@ -1319,6 +1319,8 @@ lib/python${MODPY_VERSION}/site-packages/networkx/draw
 
lib/python${MODPY_VERSION}/site-packages/networkx/drawing/tests/${MODPY_PYCACHE}test_pydot.${MODPY_PYC_MAGIC_TAG}pyc
 
lib/python${MODPY_VERSION}/site-packages/networkx/drawing/tests/${MODPY_PYCACHE}test_pylab.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION}
 
lib/python${MODPY_VERSION}/site-packages/networkx/drawing/tests/${MODPY_PYCACHE}test_pylab.${MODPY_PYC_MAGIC_TAG}pyc
+lib/python${MODPY_VERSION}/site-packages/networkx/drawing/tests/baseline/
+lib/python${MODPY_VERSION}/site-packages/networkx/drawing/tests/baseline/test_house_with_colors.png
 lib/python${MODPY_VERSION}/site-packages/networkx/drawing/tests/test_agraph.py
 lib/python${MODPY_VERSION}/site-packages/networkx/drawing/tests/test_layout.py
 lib/python${MODPY_VERSION}/site-packages/networkx/drawing/tests/test_pydot.py
@@ -1500,6 +1502,7 @@ lib/python${MODPY_VERSION}/site-packages/networkx/gene
 
lib/python${MODPY_VERSION}/site-packages/networkx/generators/tests/test_triads.py
 lib/python${MODPY_VERSION}/site-packages/networkx/generators/trees.py
 lib/python${MODPY_VERSION}/site-packages/networkx/generators/triads.py
+lib/python${MODPY_VERSION}/site-packages/networkx/lazy_imports.py
 lib/python${MODPY_VERSION}/site-packages/networkx/linalg/
 lib/python${MODPY_VERSION}/site-packages/networkx/linalg/__init__.py
 
${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/networkx/linalg/${MODPY_PYCACHE}/
@@ -1728,6 +1731,8 @@ lib/python${MODPY_VERSION}/site-packages/networkx/test
 
lib/python${MODPY_VERSION}/site-packages/networkx/tests/${MODPY_PYCACHE}test_exceptions.${MODPY_PYC_MAGIC_TAG}pyc
 
lib/python${MODPY_VERSION}/site-packages/networkx/tests/${MODPY_PYCACHE}test_import.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION}
 
lib/python${MODPY_VERSION}/site-packages/networkx/tests/${MODPY_PYCACHE}test_import.${MODPY_PYC_MAGIC_TAG}pyc
+lib/python${MODPY_VERSION}/site-packages/networkx/tests/${MODPY_PYCACHE}test_lazy_imports.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION}
+lib/python${MODPY_VERSION}/site-packages/networkx/tests/${MODPY_PYCACHE}test_lazy_imports.${MODPY_PYC_MAGIC_TAG}pyc
 
lib/python${MODPY_VERSION}/site-packages/networkx/tests/${MODPY_PYCACHE}test_relabel.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION}
 
lib/python${MODPY_VERSION}/site-packages/networkx/tests/${MODPY_PYCACHE}test_relabel.${MODPY_PYC_MAGIC_TAG}pyc
 
lib/python${MODPY_VERSION}/site-packages/networkx/tests/test_all_random_functions.py
@@ -1737,6 +1742,7 @@ lib/python${MODPY_VERSION}/site-packages/networkx/test
 lib/python${MODPY_VERSION}/site-packages/networkx/tests/test_convert_scipy.py
 lib/python${MODPY_VERSION}/site-packages/networkx/tests/test_exceptions.py
 lib/python${MODPY_VERSION}/site-packages/networkx/tests/test_import.py
+lib/python${MODPY_VERSION}/site-packages/networkx/tests/test_lazy_imports.py
 lib/python${MODPY_VERSION}/site-packages/networkx/tests/test_relabel.py
 lib/python${MODPY_VERSION}/site-packages/networkx/utils/
 lib/python${MODPY_VERSION}/site-packages/networkx/utils/__init__.py
@@ -1822,6 +1828,7 @@ share/doc/networkx-${MODPY_EGG_VERSION}/examples/algor
 
share/doc/networkx-${MODPY_EGG_VERSION}/examples/algorithms/plot_parallel_betweenness.py
 share/doc/networkx-${MODPY_EGG_VERSION}/examples/algorithms/plot_rcm.py
 share/doc/networkx-${MODPY_EGG_VERSION}/examples/algorithms/plot_snap.py
+share/doc/networkx-${MODPY_EGG_VERSION}/examples/algorithms/plot_subgraphs.py
 share/doc/networkx-${MODPY_EGG_VERSION}/examples/basic/
 share/doc/networkx-${MODPY_EGG_VERSION}/examples/basic/README.txt
 share/doc/networkx-${MODPY_EGG_VERSION}/examples/basic/plot_properties.py
@@ -1850,6 +1857,7 @@ share/doc/networkx-${MODPY_EGG_VERSION}/examples/drawi
 share/doc/networkx-${MODPY_EGG_VERSION}/examples/drawing/plot_selfloops.py
 share/doc/networkx-${MODPY_EGG_VERSION}/examples/drawing/plot_simple_path.py
 share/doc/networkx-${MODPY_EGG_VERSION}/examples/drawing/plot_spectral_grid.py
+share/doc/networkx-${MODPY_EGG_VERSION}/examples/drawing/plot_tsp.py
 share/doc/networkx-${MODPY_EGG_VERSION}/examples/drawing/plot_unix_email.py
 share/doc/networkx-${MODPY_EGG_VERSION}/examples/drawing/plot_weighted_graph.py
 share/doc/networkx-${MODPY_EGG_VERSION}/examples/drawing/unix_email.mbox

[update] math/py-networkx to 2.7.1

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