Upstream has relocated source to Github, and are using 
a tarball that requires a pre-configure step.

It is still the same release 2.92.  Tested on amd64.

My thanks to David Hill for letting me know Upstream had
transitioned development to Github.
Index: Makefile
===================================================================
RCS file: /systems/cvs/ports/net/transmission/Makefile,v
retrieving revision 1.106
diff -u -p -r1.106 Makefile
--- Makefile    1 Sep 2016 10:53:27 -0000       1.106
+++ Makefile    21 Sep 2016 09:48:33 -0000
@@ -9,7 +9,7 @@ DISTNAME=       transmission-${VER}
 PKGNAME-main=  transmission-${VER}
 PKGNAME-gtk=   transmission-gtk-${VER}
 PKGNAME-qt=    transmission-qt-${VER}
-REVISION=      0
+REVISION=      1
 CATEGORIES=    net
 HOMEPAGE=      http://www.transmissionbt.com/
 MAINTAINER=    Josh Grosse <j...@jggimi.homeip.net>
@@ -17,8 +17,9 @@ MAINTAINER=   Josh Grosse <j...@jggimi.hom
 # GPLv2+
 PERMIT_PACKAGE_CDROM=  Yes
 
-MASTER_SITES=  http://download.transmissionbt.com/files/
-EXTRACT_SUFX=  .tar.xz
+GH_ACCOUNT=    transmission
+GH_PROJECT=    transmission
+GH_TAGNAME=    ${VER}
 
 MULTI_PACKAGES=        -main -gtk -qt
 
@@ -69,6 +70,8 @@ RUN_DEPENDS-qt=       ${PKGNAME-main}:${BUILD_
 
 USE_GMAKE=     Yes
 CONFIGURE_STYLE=gnu
+AUTOCONF_VERSION=      2.69
+AUTOMAKE_VERSION=      1.15
 
 CONFIGURE_ARGS=        --disable-shared \
                --enable-cli \
@@ -96,6 +99,14 @@ CONFIGURE_ARGS+=--without-gtk
 
 pre-patch:
        @cd ${WRKSRC}/third-party/libutp; perl -pi -e 's/\r$$//' *.h *.cpp
+
+pre-configure:
+       cd ${WRKSRC}; \
+       rm m4/glib-gettext.m4; \
+       env \
+               AUTOMAKE_VERSION=${AUTOMAKE_VERSION} \
+               AUTOCONF_VERSION=${AUTOCONF_VERSION} \
+       ${WRKSRC}/autogen.sh
 
 .if ${BUILD_PACKAGES:M-qt}
 post-build:
Index: distinfo
===================================================================
RCS file: /systems/cvs/ports/net/transmission/distinfo,v
retrieving revision 1.50
diff -u -p -r1.50 distinfo
--- distinfo    8 Mar 2016 16:14:16 -0000       1.50
+++ distinfo    21 Sep 2016 02:35:02 -0000
@@ -1,2 +1,2 @@
-SHA256 (transmission-2.92.tar.xz) = 
Oo0EXDBq2ay3v4ESaTm5WUVTo4hILvoOwb+2eyKs018=
-SIZE (transmission-2.92.tar.xz) = 3378116
+SHA256 (transmission-2.92.tar.gz) = 
glR00SlgYc7JZCpNZ3x7tf8MqtVl5e35FmIq1hShVEM=
+SIZE (transmission-2.92.tar.gz) = 6338137

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