is there a reason why the words "bond", "compose", "atop", "at" and "key"
were chosen?  Is there a naming context, or a natural language example to
give a sense of how these words came to represent these ideas?

For the most part, I think I understand what these verbs and conjunctions
do... it's just that I don't have a story behind them in the same way as I
might for something like boxing.  i.e.

real world places where you immediately apply the inverse of a preceding
function after doing an operation along the line of boxing (something that
I read that Ken asked once).  Examples of this:

   - open fridge door, get milk, close fridge door
   - surgeon: make incision, do operation, stitch up

following up on some of these words.  Here's what I got out of the oed
earlier:

key: b. intr. Of a plant or animal: to be identified or assigned to a
particular taxon by the use of a key. Usu. with out.

Any clues appreciated.

thanks,
-Steven T.
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