[3. text/xml; scopus_test.xml]...
Note that this file has bad (non-UTF8) encoding:
$ xmllint --noout /tmp/scopus_test.xml
/tmp/scopus_test.xml:107: parser error : Input is not proper UTF-8,
indicate encoding ! Bytes: 0xB0 0x43 0x20 0x69 ct of modifying
agents used. There was an increase in hot paste viscosity at 90 ^
If you have your record files in Latin-1, then you should first convert
them to UTF-8.
sorry, I attached you the files in the wrong encoding (I opened the
files over my mail program). Now I send you the original files in utf-8
(like it was the hole time on our invenio installation).
now xmllint should be ok:
$ xmllint --noout scopus_simple_test.xml
$ xmllint --noout scopus_test.xml
but the bibupload error further exists.
2010-11-29 14:21:51 --> argv=['/cdsware/cds-invenio/bin/bibupload',
'-ir', '/cdsware/home/cdsware/scopus_test.xml', '-v9']
2010-11-29 14:21:51 --> _OPTIONS={'notimechange': 0, 'tag': None,
'verbose': 1, 'stage_to_start_from': 1, 'pretend': False, 'file_path':
'/cdsware/home/cdswa
re/scopus_test.xml', 'mode': 'replace_or_insert'}
2010-11-29 14:21:51 --> _TASK_PARAMS={'profile': [],
'task_stop_helper_fnc': None, 'verbose': 9, 'task_id': 7726,
'sleeptime': '', 'runtime_limit': None, 'pr
iority': 0, 'task_specific_name': '', 'version': '$Id$', 'user': '',
'task_name': 'bibupload', 'runtime': '2010-11-29 14:21:51'}
2010-11-29 14:21:51 --> Task #7726 started.
2010-11-29 14:21:51 --> Updating task status to RUNNING.
2010-11-29 14:21:51 --> Input file
'/cdsware/home/cdsware/scopus_test.xml', input mode 'replace_or_insert'.
2010-11-29 14:21:51 --> STAGE 0:
2010-11-29 14:21:51 --> start preocessing
2010-11-29 14:21:51 --> Updating task progress to Reading XML input.
2010-11-29 14:21:51 --> -Open XML marc: DONE
2010-11-29 14:21:51 --> Entering task_sleep_now_if_required with
status=RUNNING
2010-11-29 14:21:51 --> Entering records loop
2010-11-29 14:21:51 --> Entering task_sleep_now_if_required with
status=RUNNING
2010-11-29 14:21:51 --> Inserting into main database
2010-11-29 14:21:51 --> -Tag 001 not found in the xml marc file.
2010-11-29 14:21:51 --> -Checking if SYSNO SCP:33847073788 exists in
the database
2010-11-29 14:21:51 --> -Tag SYSNO value not found in database.
2010-11-29 14:21:51 --> -Checking if EXTOAIID SCP:33847073788 (None)
exists in the database
2010-11-29 14:21:51 --> Looking for extoaiid="SCP:33847073788" with
extoaisrc="None"
2010-11-29 14:21:51 --> Partially found intbitset([]) for
extoaiid="SCP:33847073788"
2010-11-29 14:21:51 --> -Tag EXTOAIID value not found in database.
2010-11-29 14:21:51 --> -Tag SYSNO not found in the xml marc file.
2010-11-29 14:21:51 --> -Check if the xml marc file is already in the
database: DONE
2010-11-29 14:21:51 --> Error during the creation_new_record function
: (1062, "Duplicate entry '0' for key 1")
2010-11-29 14:21:51 --> Updating task status to ERROR.
2010-11-29 14:21:51 --> Task #7726 finished. [ERROR]
Best Regards
Cornelia
------------------------------------------------------------------------------------------------
------------------------------------------------------------------------------------------------
Forschungszentrum Juelich GmbH
52425 Juelich
Sitz der Gesellschaft: Juelich
Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498
Vorsitzender des Aufsichtsrats: MinDirig Dr. Karl Eugen Huthmacher
Geschaeftsfuehrung: Prof. Dr. Achim Bachem (Vorsitzender),
Dr. Ulrich Krafft (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt,
Prof. Dr. Sebastian M. Schmidt
------------------------------------------------------------------------------------------------
------------------------------------------------------------------------------------------------
<?xml version="1.0" ?>
<!--Marc XML VDB Document-->
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<subfield code="a">Raina C.</subfield>
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<subfield code="a">A comparative study of Indian rice starches using different modification model solutions</subfield>
</datafield>
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<subfield code="c">2007</subfield>
<subfield code="m">06</subfield>
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<subfield code="a">LWT - Food Science and Technology</subfield>
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<subfield code="a">Starches extracted from rice flour from broken kernels of three rice cultivars (PUSA-44, PR-106 and PR-114) have been selected for modification studies due to their varied amylose content. Model solutions with different types and concentrations of modifying agents were prepared for comparative study of effect of amylose variation among the varieties and also individual and combined effect of modifying agents used. There was an increase in hot paste viscosity at 90 °C in modified starches whereas, cold paste viscosity decreased upon modification. A greater effect was observed with in dual modification of starches. The total set back was significantly lower in modified starches indicating the decreased retro-gradation of starch gels upon modification. The DSC results showed decreases in ÎH, To, Tp, and Tc, indicating that hydroxypropylation cross-linking and acetylation affect the structure of starches granules, requiring less heat for gelatinization. Pasting and thermal properties of PUSA-44 were significantly different from those of PR-106 and PR-114, probably due to relative higher amylose contents in the former. As observed in this study, bi-functional modifying agents can reduce the extent of cross-linking. Acetylation modified the morphology of the starch. However, hydroxypropylation cross-linking and dual modification retained the original structure with little modification. © 2006 Swiss Society of Food Science and Technology.</subfield>
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<subfield code="m">Aziz A.;Daik R.;Ghani M.A.;Daud N.I.K.;Yamin B.M.;</subfield>
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<subfield code="m">Cheng Y.L.;Mei L.T.;Kuo H.T.;</subfield>
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<subfield code="p">415-420</subfield>
<subfield code="v">73</subfield>
<subfield code="n">4</subfield>
<subfield code="y">1996</subfield>
<subfield code="r">SGR:0029911393</subfield>
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<subfield code="m">Cheol Y.;Un-Hua P.;Kwan-Hwa P.;</subfield>
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<subfield code="n">2</subfield>
<subfield code="y">1993</subfield>
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</datafield>
<datafield tag="999" ind1="C" ind2="5">
<subfield code="m">Gonzalez Z.;Perez E..;</subfield>
<subfield code="t">Starch/Stäerke</subfield>
<subfield code="p">148-154</subfield>
<subfield code="v">54</subfield>
<subfield code="y">2002</subfield>
<subfield code="r">SGR:0036530129</subfield>
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<datafield tag="999" ind1="C" ind2="5">
<subfield code="m">Grant L.A.;</subfield>
<subfield code="t">Cereal Chemistry</subfield>
<subfield code="p">590-594</subfield>
<subfield code="v">75</subfield>
<subfield code="n">5</subfield>
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<subfield code="r">SGR:0031669552</subfield>
</datafield>
<datafield tag="999" ind1="C" ind2="5">
<subfield code="m">Hoover R.;Sosulski F.;</subfield>
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<subfield code="v">37</subfield>
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<subfield code="m">Jarowenko W.;</subfield>
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<subfield code="p">55-77</subfield>
<subfield code="y">1986</subfield>
<subfield code="r">SGR:0003306811</subfield>
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<subfield code="m">Jeong J.H.;Lee M.H.;Oh M..J.;</subfield>
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<subfield code="v">21</subfield>
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<subfield code="r">SGR:33847056438</subfield>
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<subfield code="m">Kurasawa H.;Kanauti Y.;Takei K.;Gawa S.;Okabe T.;Hoyakawa T.;</subfield>
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<subfield code="y">1972</subfield>
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<datafield tag="999" ind1="C" ind2="5">
<subfield code="m">Lares M.;Perez E.;Gonzalez Z.;</subfield>
<subfield code="t">Journal of Agriculture and Food Chemistry</subfield>
<subfield code="p">2546-2549</subfield>
<subfield code="v">45</subfield>
<subfield code="y">1997</subfield>
<subfield code="r">SGR:0642332191</subfield>
</datafield>
<datafield tag="999" ind1="C" ind2="5">
<subfield code="m">Liu H.;Lawrence R.;Corke H.;</subfield>
<subfield code="t">Carbohydrate Polymers</subfield>
<subfield code="p">183-289</subfield>
<subfield code="v">4</subfield>
<subfield code="y">1997</subfield>
<subfield code="r">SGR:33847022485</subfield>
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<datafield tag="999" ind1="C" ind2="5">
<subfield code="m">Morikawa K.;Nishinari K.;</subfield>
<subfield code="t">Carbohydrates Polymer</subfield>
<subfield code="p">241-247</subfield>
<subfield code="v">43</subfield>
<subfield code="y">2000</subfield>
<subfield code="r">SGR:0343341665</subfield>
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<datafield tag="999" ind1="C" ind2="5">
<subfield code="m">Nurul I.;Azemi B.M.N.M.;</subfield>
<subfield code="t">Starch/Stäerke</subfield>
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<subfield code="v">47</subfield>
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<datafield tag="999" ind1="C" ind2="5">
<subfield code="m">Pathama C.;Saiyavit V.;Pavinee C.;</subfield>
<subfield code="t">Cereal Chemistry</subfield>
<subfield code="p">315-319</subfield>
<subfield code="v">77</subfield>
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