Hello Guys,
Was there a resolution on the date(s) time(s) for this conference call?
-B
--
Brian Gilman
President Panther Informatics Inc.
E-Mail: [EMAIL PROTECTED]
[EMAIL PROTECTED]
AIM: gilmanb1
01000010 01101001 01101111
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01101110
On Feb 21, 2006, at 8:53 AM, Alfredo Morales wrote:
Earlier in the week would work better for me (Monday or Tuesday) -
rest
of the week seems to be unpredictable most of the times. 11:00am EST
will work in the immediate future.
-----Original Message-----
From: Kashyap, Vipul [mailto:[EMAIL PROTECTED]
Sent: Monday, February 20, 2006 12:04 PM
To: public-semweb-lifesci
Cc: John Madden; Vinay K. Chaudhri; [EMAIL PROTECTED];
[EMAIL PROTECTED]; Robert Stevens; Amit Sheth @ LSDIS; Alfredo
Morales; Ullman-Cullere, Mollie; [EMAIL PROTECTED]; Mark Musen; Susie
Stephens; [EMAIL PROTECTED]; Alan Rector
Subject: [OWG] Telecon
Hi,
Would like to schedule a teleconference to discuss the project plan
and
short term/long term deliverables.
Would like to schedule it initially as a weekly call for an hour
around
11am Eastern (as this works very well for people on the West Coast and
Europe) so that we can make rapid progress. As things get finalized
and
stable, we can then reduce the frequency of the calls.
Please let me know the days which will work for you guys (Tuesday -
Friday).
Thanks and Regards,
---Vipul
-----Original Message-----
From: Kashyap, Vipul
Sent: Monday, February 13, 2006 5:53 PM
To: 'public-semweb-lifesci'
Cc: 'John Madden'; 'Vinay K. Chaudhri'; '[EMAIL PROTECTED]';
'[EMAIL PROTECTED]'; 'Robert Stevens'; 'Amit Sheth @ LSDIS';
'Alfredo Morales'; Ullman-Cullere, Mollie; '[EMAIL PROTECTED]';
'Mark
Musen'; 'Susie Stephens'; '[EMAIL PROTECTED]'; 'Alan Rector';
Kashyap, Vipul
Subject: RE: Ontology Working Group Proposal Draft
Hi,
A revised version of the Ontology Task Force Proposal is attached
with
this proposal. A list of proposed tasks with proposed task
coordinators is as follows. Please let me know if you would rather
coordinate other tasks.
These is just an initial proposal and I have tried to accommodate
everyone!
Collaborators of other collaborating task groups have also been
identified.
1. Use Cases Document (3 months):
Task Coordinators: Vipul Kashyap, Mollie Ullman-Cullere
Collaborating Task Coordinators: Susie Stephens?, Helen Chen?
2. Ontology Definitions and Best Practices White Paper (1 year):
Task Coordinators: Alfredo Morales, Wangxiao, Robert Stevens
Collaborating Task Coordinators: Alan Rector?, Helen Chen
3. Ontology Access and Usage Best Practices Report (6 months):
Task Coordinators: Duncan Hall, Ray Hookaway
Collaborating Task Coordinators: Mark Musen?, Susie Stephens?,
Helen Chen?
4. Creation of Wikis for Collaborative Ontology Development (6
months):
Task Coordinators: John Madden, Wangxiao
Collaborating Task Coordinators: Mark Musen?
5. Ontology Maintenance Report (18 months):
Task Coordinators: Mark Musen
Collaborating Task Coordinators: Vinay Chaudhri, Alan Rector
6. Ontology Evaluation Report (18 months):
Task Coordinators: Mark Musen
Collaborating Task Coordinators: Amit Sheth, Alan Rector?
7. Use Case Solution Design (2 years):
Task Coordinators: Vipul Kashyap, John Madden, Alfredo Morales
Collaborating Task Coordinators: Susie Stephens?
Please let me have your comments, feedback and suggestions on the
task
breakdown and assignments.
We also need to have our own teleconference, maybe the week after
February 20th, say February 27th. Let me know if that day works for
you guys.
Cheers,
---Vipul
-----Original Message-----
From: Miller, Michael D (Rosetta)
[mailto:[EMAIL PROTECTED]
Sent: Friday, February 03, 2006 6:13 PM
To: Kashyap, Vipul; public-semweb-lifesci
Cc: John Madden; Vinay K. Chaudhri; [EMAIL PROTECTED];
[EMAIL PROTECTED]; Robert Stevens; Amit Sheth @ LSDIS;
Alfredo Morales; Ullman-Cullere, Mollie; [EMAIL PROTECTED]; Mark
Musen
Subject: RE: Ontology Working Group Proposal Draft
Hi All,
Overall, it looks like a nice formulation. I especially like the
emphasis in practical usage.
For point 2, there is an additional class of ontologies for
annotating life science studies/investigations/experiments for
purposes of publication and reproducibility.
For microarray experiments, several major scientific journals,
including the Nature group, The Lancet, Cell and EMBO journal
adopted MIAME recommendations and submission of the experiment to a
repository (GEO or
ArrayExpress) as a requirement for publication of microarray
experiments.
MAGE-OM and MAGE-ML, the OMG Gene Expression specification
(http://www.omg.org/technology/documents/formal/gene_expression.htm)
, were developed as a format for describing a microarray experiment
and the MGED Ontology
(http://mged.sourceforge.net/ontologies/index.php) was developed for
use in annotating MAGE-ML documents. It is actually getting used a
great deal.
There is a follow-up effort, FuGE-OM and FuGE-ML (functional genomic
experiments) that is currently being developed, to broaden the base
to proteomics, genotyping, various -omics, etc. which is also having
a similar ontology developed.
cheers,
Michael
Michael Miller
Lead Software Developer
Rosetta Biosoftware Business Unit
www.rosettabio.com
-----Original Message-----
From: [EMAIL PROTECTED]
[mailto:[EMAIL PROTECTED] On Behalf Of
Kashyap, Vipul
Sent: Friday, February 03, 2006 2:27 PM
To: public-semweb-lifesci
Cc: John Madden; Vinay K. Chaudhri; [EMAIL PROTECTED];
[EMAIL PROTECTED]; Robert Stevens; Amit Sheth @ LSDIS;
Alfredo Morales; Ullman-Cullere, Mollie; [EMAIL PROTECTED];
Kashyap, Vipul; Mark Musen
Subject: Ontology Working Group Proposal Draft
Hi,
The draft proposal for the Ontology Working Sub-Group is attached
with this e-mail.
I recognize that this might need to be scoped down a little bit.
Have tried to identify collaboration points with the other
sub-groups. The proposal identifies "lead" parties for each of the
deliverables.
This is a draft and any feedback and suggestions are most welcome.
Cheers,
---Vipul
=======================================
Vipul Kashyap, Ph.D.
Senior Medical Informatician
Clinical Informatics R&D, Partners HealthCare System
Phone: (781)416-9254
Cell: (617)943-7120
http://www.partners.org/cird/staff.asp?stAb=vik
To keep up you need the right answers; to get ahead you need the
right questions ---John Browning and Spencer Reiss, Wired 6.04.95
-----Original Message-----
From: [EMAIL PROTECTED]
[mailto:public-semweb-lifesci-
[EMAIL PROTECTED]
Sent: Wednesday, August 11, 2004 10:35 AM
To: Kashyap, Vipul
Subject: Re: subscribe
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====================================================
Vipul Kashyap, PhD
Senior Medical Informatician, Clinical Knowledge Management
Partners HealthCare Systems, Clinical Informatics R&D
Work: (781)416-9254
Mobile: (617)943-7120
Fax: (781)416-8913
Email: [EMAIL PROTECTED] <mailto:[EMAIL PROTECTED]>
Web: http://www.partners.org/cird/staff.asp?stAb=vik
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