This is great. Thanks, EricN.
Do we know if the tentative consideration Olivier had mentioned a
while back they were giving to doing this with the UMLS Semantic
Network would be a part of this effort?
Cheers,
Bill
On Feb 26, 2007, at 9:56 AM, Eric Neumann wrote:
FYI...
-----Original Message-----
From: Kwan, Kathy (NIH/NLM/NCBI) [E] [mailto:[EMAIL PROTECTED]
Sent: Thu 2/22/2007 6:18 PM
To: Eric Neumann
Cc: Kwan, Kathy (NIH/NLM/NCBI) [E]
Subject: RE: URIs for NCBI data
Hi Eric,
We had some intial discussions and plan to work on a stable/usable URL
scheme for our resources. When it is done, outside people could use
them to as URI to point to our resources. I'll keep you posted as
the
project gets closer to production.
Thank you for your interest in NCBI resources.
Kathy
________________________________
From: Eric Neumann [mailto:[EMAIL PROTECTED]
Sent: Saturday, February 17, 2007 12:40 PM
To: Kwan, Kathy (NIH/NLM/NCBI) [E]
Subject: RE: URIs for NCBI data
Kathy,
Yes, we are leaning towards a URL "http" identifier, thus
requiring no additional urn (lsid) resolution mechanism.
Regarding the use of #, it is usually used to describe "the
entity" (on the right side) within a RDF doc (or database). This is
not
a necessity, since a slash can always be used instead, and the request
re-routed to a database.
Something like
http://www.ncbi.nlm.nih.gov/2006/entrez/<DATABASE_GOES_HERE>/
<IDENTIFIER
_GOES_HERE> would work fine!
Eric
-----Original Message-----
From: Kwan, Kathy (NIH/NLM/NCBI) [E]
[mailto:[EMAIL PROTECTED]
Sent: Fri 2/16/2007 4:36 PM
To: Eric Neumann
Cc: Kwan, Kathy (NIH/NLM/NCBI) [E]
Subject: RE: URIs for NCBI data
Hi Eric,
Hi Eric,
Just a couple of questions, is the URI that your group
considering
mainly URL, right? If yes, is there a reason behind it?
Also, is the example that you gave:
http://www.ncbi.nlm.nih.gov/2006/entrez/
<DATABASE_GOES_HERE>#<IDENTIFIER
_GOES_HERE
arbituary, or there is a reason behind using "#" to separate
database
and identifier?
TIA,
Kathy
-----Original Message-----
From: Eric Neumann [mailto:[EMAIL PROTECTED]
Sent: Monday, January 29, 2007 1:29 PM
To: Kwan, Kathy (NIH/NLM/NCBI) [E]
Subject: URIs for NCBI data
Kathy,
Last year HCLSIG had a discussion on how best to define
URIs for
life
science data that would work with current data providers.
Discussion
have progressed, and more notes have been created regarding
authority
web identifiers for life science data entities (e.g.,
entrez-gene, etc).
Here's one such note describing how to define asn used
metadata:
http://www.w3.org/2001/tag/doc/metaDataInURI-31.html
I am not sure if you are still interested in this topic,
but our
upcoming demos hope to capitalize on URI's for data from
centers
such as
NCBI. To this end it would be useful to try and see if a
straightforward
and easy to maintain URI scheme could be considered by
NCBI, so
that we
would not have to create 'dummy' URIs for Entrez that might
accumulate
lots of links and annotations.
Basically, we would only need to agree on a stable space
for the
data in
consideration (e.g.,
http://www.ncbi.nlm.nih.gov/2006/entrez/
<DATABASE_GOES_HERE>#<IDENTIFIER
_GOES_HERE>)-- it would not need to resolve to anything (like
RDF or
XML) at this point.
If you have questions or need more information, I'd be
happy to
help
out, or even organize a discussion with interested HCLSIG
members.
best,
Eric
Eric Neumann, PhD
co-chair, W3C Healthcare and Life Sciences
+1 (781)856-9132
Bill Bug
Senior Research Analyst/Ontological Engineer
Laboratory for Bioimaging & Anatomical Informatics
www.neuroterrain.org
Department of Neurobiology & Anatomy
Drexel University College of Medicine
2900 Queen Lane
Philadelphia, PA 19129
215 991 8430 (ph)
610 457 0443 (mobile)
215 843 9367 (fax)
Please Note: I now have a new email - [EMAIL PROTECTED]
