Re: Is there an NCBI taxonomy in OWL ?

[Lee Feigenbaum]

Slides from the C-SHALS HCLS tutorial(s) are available at:

http://esw.w3.org/topic/HCLS/CSHALS2009/Tutorial

Thanks to Susie for pulling everything together.

Lee

Kei Cheung wrote:

I think the slides of the HCLS tutorial session at C-SHALS might be availlable to public. The C-SHALS organizers (e.g., Susie) con confirm. If not, I can make my slides available through the BioRDF site.

Thanks,

-Kei

Erick Antezana wrote:

Kei,

 would it be possible to get your slides? do you know if the material
disucussed during the C-SHALS will be available?

thanks,
Erick

I gave the following neuroscience URI examples in my biordf talk at
C-SHALS yesterday.

http://dbpedia.org/resource/Dopamine_receptor
http://purl.org/ycmi/senselab/neuron_ontology.owl#Dopaminergic_Receptor
http://purl.org/nif/ontology/NIF-Molecule.owl#nifext_5832

I pointed out that the last one might be a possible solution. There
might be hope. :-)

-Kei


Alan Ruttenberg wrote:

So I count three different sets of URIs for NCBI taxonomy so far. :(
-Alan

On Fri, Feb 27, 2009 at 11:37 AM, Chris Mungall <c...@berkeleybop.org>
wrote:

also..

part of the NCBI taxonomy is in NIF Organism:

http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl

See also:

https://wiki.neuinfo.org/xwiki/bin/view/Main/NIFSTDoverview
http://neuinfo.org


On Feb 25, 2009, at 4:17 PM, andrea splendiani (RRes-Roth) wrote:

Thanks!

It'2 240M, but compressed is only 9.
I wonder whether there is some architecture to transparently transfer
compressed ontologies...

Ciao,
Andrea

-----Original Message-----
From: Chris Mungall [mailto:c...@berkeleybop.org]
Sent: 25 February 2009 20:53
To: andrea splendiani (RRes-Roth)
Cc: public-semweb-lifesci hcls
Subject: Re: Is there an NCBI taxonomy in OWL ?


On Feb 25, 2009, at 11:58 AM, Andrea Splendiani wrote:

Hi,

I was looking for an NCBI Taxnomoy in OWL, but I didn't find it (or
better, could find fragment from other projects...)

What is strange though, is that on the obo foundry website
(berkeleybop.org/ontologies) there are notes on the ncbi taxonomy
representation in owl... but not the representation itself.

Temporarily dropped from the summary page but still available at the
usual URL
http://purl.org/obo/owl/NCBITaxon

(warning: large..)

Does anybody have some hint about where I can fin an OWL version ?
Or even an RDF version ? Even better would a sparql endpoint
containing it...

best,
Andrea Splendiani