Hi Helena,
Only a little part of it, I'll publish the model with a small diagram
soon. This is an initial iteration so we will improve this in the future.
Cheers,
James
On 09/06/2011 17:28, Helena Deus wrote:
Hi All
That is fantastic news :-)
Was the EFO model used for this data?
Cheers,
Lena
-----Original Message-----
From: public-semweb-lifesci-requ...@w3.org
[mailto:public-semweb-lifesci-requ...@w3.org] On Behalf Of Michael Miller
Sent: 09 June 2011 15:59
To: public-semweb-lifesci@w3.org
Cc: Jun Zhao; Tomasz Adamusiak; James Malone
Subject: GXA triples
hi all,
jun zhao has kindly hosted the initial go at triplifying the Gene Expression
Atlas (james' and tomasz' efforts)
http://www.open-biomed.org.uk/sparql/endpoint/gxa
To access a UI for the SPARQL endpoint, please go to:
1. http://www.open-biomed.org.uk/sparql/query.html
2. and set path to endpoint to: endpoint/gxa
see below for more info.
cheers,
michael
Michael Miller
Software Engineer
Institute for Systems Biology
-----Original Message-----
From: Jun Zhao [mailto:jun.z...@zoo.ox.ac.uk]
Sent: Thursday, June 09, 2011 5:16 AM
To: tomasz.adamus...@ebi.ac.uk
Cc: Tomasz Adamusiak; James Malone; Michael Miller
Subject: Re: Model blank nodes for GEA data
Dear all,
I am pleased to let you know that the SPARQL endpoint is now up and
running at:
http://www.open-biomed.org.uk/sparql/endpoint/gxa
which has constraints such as not allowing COUNT queries.
<snip>
Have a go and let me know what you think:)
I wrote the following text in case you would like to announce it
publicly after running some test queries on it.
==============
The total number of triples is ~37 million. They were loaded in a
triple store powered by Jena TDB and Milarq.
The data can be accessed at the SPARQL endpoint:
http://www.open-biomed.org.uk/sparql/endpoint/gxa
To access a UI for the SPARQL endpoint, please go to:
1. http://www.open-biomed.org.uk/sparql/query.html
2. and set path to endpoint to: endpoint/gxa
You can run the ASK query to test the endpoint.
However, to ensure the quality of the SPARQL endpoint, it does not
support by default queries with COUNT etc. If you do need to test such
queries, please email us and we will send you the more open access
SPARQL endpoint.
=============
cheers,
Jun
<snip>
--
European Bioinformatics Institute,
Wellcome Trust Genome Campus,
Cambridge, CB10 1SD,
United Kingdom
Tel: + 44 (0) 1223 494 676
Fax: + 44 (0) 1223 494 468
