A a point of discussion for today's meeting, here is the source of an extension to TMO that describes the variants of the approx. 380 core pharmacogenomics biomarkers in dbSNP: http://code.google.com/p/translationalmedicineontology/source/browse/trunk/ontology/extensions/dbsnp_pharmacogenomics_core.ttl
I created that file with a script that parses the output produced by the dbSNP batch query service at http://www.ncbi.nlm.nih.gov/projects/SNP/batchquery.html @EricP: The namespace for this extension is still not settled -- maybe we could use a W3C namespace as we did for the TMO ontology itself? @Michel: I tried to link to your Bio2RDF version of dbSNP, currently only via rdfs:seeAlso links to your dev server (the data still does not seem to be available on the public Bio2RDF server. We should try to do this properly as soon as possible. - Matthias From: Matthias Samwald Sent: Thursday, April 12, 2012 10:55 AM To: public-semweb-lifesci@w3.org Cc: Gökhan Karakülah Subject: Teleconference Reminder: Clinical Decision Support for Personalized Medicine Dear all, The CDS telecon today at 11am EST (17:00 Central European Time) will focus on advancing the "big pharmacogenomics paper" that some of us have been working on (trying to demonstrate RDF-based pharmacogenomics data integration and decision support). If you have pharmacogenomic data in RDF / Linked Data format, it would be great if you could join -- maybe we could integrate your data into our demo. Cheers, Matthias ''' Conference Details''' Clinical Decision Support for Personalized Medicine http://www.w3.org/wiki/HCLSIG/CDS Date of Call: Thursday April 12 2012 Time of Call: 11:00am - 12:00pm ET Dial-In #: +1.617.761.6200 (Cambridge, MA) Dial-In #: +33.4.26.46.79.03 (Paris, France) Dial-In #: +44.203.318.0479 (London, UK) Participant Access Code: 4257 ("HCLS") IRC Channel: irc.w3.org port 6665 channel #HCLS (see [http://www.w3.org/Project/IRC/ W3C IRC page] for details, or see [http://cgi.w3.org/member-bin/irc/irc.cgi Web IRC]) Mibbit quick start: Click on [http://www.mibbit.com/chat/?server=irc.w3.org:6665&channel=%23hcls mibbit] for instant IRC access Duration: 1h Convener: Matthias Samwald ''' Agenda''' * Advancing the "big pharmacogenomics paper" that some of us have been working on (for pharmacogenomics data integration and RDF-based decision support). * Other topics suggested by participants.
