Hi Chris, We'll be moving the new omim build to the bio2rdf server (along with new builds for pharmgkb, ncbi gene, CTD, drugbank, and a few others). I've put the store back up for now.
There are associations to HPO already in omim. For instance: http://bio2rdf.semanticscience.org:8009/describe/?url=http%3A%2F%2Fbio2rdf.org%2Fomim_resource%3A261900_cs Best, m. On Tue, Aug 7, 2012 at 12:46 PM, Chris Mungall <cjmung...@lbl.gov> wrote: > Hi Michael > > I can't seem to connect to the triplestore. > > Have you considered adding associations between OMIM and phenotype > ontology classes? These can be downloaded from > http://www.human-phenotype-ontology.org/ as tab delimited files that can > trivially be converted to an rdf model of choice (we will be providing OWL > for this ourselves in the future, it will likely differ in modeling and > URIs from bio2rdf). > > On Jul 20, 2012, at 12:32 PM, Michel Dumontier wrote: > > Hi, > Using the OMIM API [1], I produced an RDF version of OMIM (github code > [2]) which I've subsequently loaded into a (temporary) virtuoso endpoint > [3]. The easiest way to get into the system is through a faceted search > [4], or from the list of types [5], or you can try looking at a VKORC1 > associated variation as an entry point [6]. > > comments and suggestions welcome. > > [1] http://www.omim.org/help/api > [2] https://github.com/bio2rdf/bio2rdf-scripts/blob/master/omim/omim.php > [3] http://bio2rdf.semanticscience.org:8009/sparql > [4] http://bio2rdf.semanticscience.org:8009/fct > [5] http://goo.gl/HQ8rO > [6] > http://bio2rdf.semanticscience.org:8009/describe/?url=http%3A%2F%2Fbio2rdf.org%2Fomim_resource%3A608547_allele_1 > > > -- > Michel Dumontier > Associate Professor of Bioinformatics, Carleton University > Chair, W3C Semantic Web for Health Care and the Life Sciences Interest > Group > http://dumontierlab.com > > > -- Michel Dumontier Associate Professor of Bioinformatics, Carleton University Chair, W3C Semantic Web for Health Care and the Life Sciences Interest Group http://dumontierlab.com