sounds good to me.
sorry i got cut off as we were saying goodbyes ;p
On 29/04/13 17:20, Michel Dumontier wrote:
given the bank holiday next week, perhaps we can schedule a call for
tuesday?
m.
On Mon, Apr 29, 2013 at 5:04 PM, Alasdair J G Gray
<alasdair.g...@manchester.ac.uk
<mailto:alasdair.g...@manchester.ac.uk>> wrote:
Hi All,
Minutes from today's call attached.
Alasdair
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On 29 Apr 2013, at 13:42, Michel Dumontier
<michel.dumont...@gmail.com <mailto:michel.dumont...@gmail.com>>
wrote:
Hi all,
Here's the meeting info for today:
--------------
Meeting URL
http://fuze.me/19537803
Toll / Intl #: +1 (646) 583-7415 <tel:%2B1%20%28646%29%20583-7415>
Toll free #:
Attendee PIN #: 47479369
--------------
m.
On Mon, Apr 29, 2013 at 1:37 PM, Health Care Life Sciences
<w3.h...@gmail.com <mailto:w3.h...@gmail.com>> wrote:
more details »
<https://www.google.com/calendar/event?action=VIEW&eid=cm1yMWZub29jN2Q4NjdqaTdkZmdma2RkOGMgcHVibGljLXNlbXdlYi1saWZlc2NpQHczLm9yZw&tok=MTcjdzMuaGNsc0BnbWFpbC5jb20zYjk2YjBjYjkyNGM0Zjg2MTZkYjJkZjZkMjg2Nzk1MTA4YTE0NmQw&ctz=America/New_York&hl=en>
Linked Life Data
This meeting will be held using fuze: please join at **Michel
will send fuzebox info**
Note: There have been various small hiccups with fuzebox so I
recommend that you join ahead of time if you aren't sure
about fuzebox working properly. I recently discovered that
you will get *no message* if there is no Internet
connectivity - it will simply do nothing when you start the
local fuzebox client.
Duration: ~1 hour
(Variable) frequency: ~weekly
Convener: M. Scott Marshall
Session Theme: Metadata for data discovery and dataset
description using SPARQL
* a model for provenance, versioning, format and availability
- Michel, Alasdair
Relevant docs:
the abstraction
-
https://docs.google.com/drawings/d/1e6qsxPkc-qKecVTJGJePE1Nuy2sD8Puu-FsEtUtGC-o/edit?disco=AAAAAFWHcnw
sample implementation using chembl:
-
https://docs.google.com/file/d/0B4y0zfdRviKsS1l2NEttN3pfc1k/edit
* Remaining metadata attributes in working draft - All (time
allowing)
- Working draft:
-
https://docs.google.com/spreadsheet/ccc?key=0Aoy0zfdRviKsdFJWTDFpblNXc3BtelhrdEpNYTdvbXc#gid=1
* AOB
**********************************************************************
Michel and Alasdair have model proposal for a dataset version
and formatting: thrashing out
the final details and will present as the first item at the
next call.
Focus on provenance and origin:
Version: literal
Dates: Full date time with timezone
Modified by: URI for a person
Source: Needs to be present and specify the version/date of
the source
Prior version: point to URI
Superseding version: Maintenance issue; can be inferred;
provenance vocabularies
only point backwards
Subset/superset: only assert that you are a subset of another one
Frequency of change: estimate; use a URI for the value, e.g.
dublin core
Latency of change: time it takes for changes in the raw data
to appear in the derived
dataset. Very specialised and probably not to be included
created with: realised we need to point to a tool that was
used to generate the dataset;
particularly for D2R or Bio2RDF point to versions of scripts
Aggregation of datasets is covered by source/derivation:
simply include multiple sources
Availability
Availability: raises a maintenance issue; could capture
available until X if it is known that
it is no longer going to be available. Good for registry use
case, but not necessarily for
data publishing. It is a monitoring property.
Publisher: need to decide a value set: literal/URI
Format: mime type of the file, not the vocabularies used;
EDAM, biosharing as
candidates
data item HTML template: to automate access
RDF dump: available in multiple formats
SPARQL endpoint
API: point to a top level page about the API rather than each
individual method
Catlog/registry: point to records in registries. Inverse
relationship with the registries
/When/
Weekly from 11:00 to 12:00 on Monday Eastern Time
/Where/ #hcls(map
<http://maps.google.com/maps?q=%23hcls&hl=en>)
/Calendar/
HCLS
/Who/
•
w3.h...@gmail.com <mailto:w3.h...@gmail.com>- organizer
•
public-semweb-lifesci@w3.org
<mailto:public-semweb-lifesci@w3.org>
•
dbcatalog
Going? All events in this series: *Yes
<https://www.google.com/calendar/event?action=RESPOND&eid=cm1yMWZub29jN2Q4NjdqaTdkZmdma2RkOGMgcHVibGljLXNlbXdlYi1saWZlc2NpQHczLm9yZw&rst=1&tok=MTcjdzMuaGNsc0BnbWFpbC5jb20zYjk2YjBjYjkyNGM0Zjg2MTZkYjJkZjZkMjg2Nzk1MTA4YTE0NmQw&ctz=America/New_York&hl=en>-
Maybe
<https://www.google.com/calendar/event?action=RESPOND&eid=cm1yMWZub29jN2Q4NjdqaTdkZmdma2RkOGMgcHVibGljLXNlbXdlYi1saWZlc2NpQHczLm9yZw&rst=3&tok=MTcjdzMuaGNsc0BnbWFpbC5jb20zYjk2YjBjYjkyNGM0Zjg2MTZkYjJkZjZkMjg2Nzk1MTA4YTE0NmQw&ctz=America/New_York&hl=en>-
No
<https://www.google.com/calendar/event?action=RESPOND&eid=cm1yMWZub29jN2Q4NjdqaTdkZmdma2RkOGMgcHVibGljLXNlbXdlYi1saWZlc2NpQHczLm9yZw&rst=2&tok=MTcjdzMuaGNsc0BnbWFpbC5jb20zYjk2YjBjYjkyNGM0Zjg2MTZkYjJkZjZkMjg2Nzk1MTA4YTE0NmQw&ctz=America/New_York&hl=en>*
more options »
<https://www.google.com/calendar/event?action=VIEW&eid=cm1yMWZub29jN2Q4NjdqaTdkZmdma2RkOGMgcHVibGljLXNlbXdlYi1saWZlc2NpQHczLm9yZw&tok=MTcjdzMuaGNsc0BnbWFpbC5jb20zYjk2YjBjYjkyNGM0Zjg2MTZkYjJkZjZkMjg2Nzk1MTA4YTE0NmQw&ctz=America/New_York&hl=en>
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--
Michel Dumontier
Associate Professor of Bioinformatics, Carleton University
Chair, W3C Semantic Web for Health Care and the Life Sciences
Interest Group
http://dumontierlab.com <http://dumontierlab.com/>
Dr Alasdair J G Gray
Research Associate
alasdair.g...@manchester.ac.uk <mailto:alasdair.g...@manchester.ac.uk>
+44 161 275 0145 <tel:%2B44%20161%20275%200145>
http://www.cs.man.ac.uk/~graya/ <http://www.cs.man.ac.uk/%7Egraya/>
Please consider the environment before printing this email.
--
Michel Dumontier
Associate Professor of Bioinformatics, Carleton University
Chair, W3C Semantic Web for Health Care and the Life Sciences Interest
Group
http://dumontierlab.com
--
--------------------------------------------------------
Nick Juty
Database Curator
European Bioinformatics Institute
Cambridge, United Kingdom
--------------------------------------------------------
