Should have replied earlier, to much to do I guess. Anyways what seems to have solved the issue in our case was an update of chocolatey to the latest stable release in the form of 0.9.9.11, updating the template of the configuration handled by puppet and also updating the chocolatey puppet module, I'm unaware of the version in that case, but that quieted it all down and now we're back to business as usual...
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