Is there any way to color by secondary structure? I know of other programs that do this (Molmol, for example- though its colors are hideous); I'd be happy using a scripted solution if that's easiest. I'm guessing there's some easy way to loop through residues or atoms and determine what their structure assignment is, but I never figured out how to access this info.
If there isn't anything that'll do this, perhaps I'll just write it. -Nat