Hi Pymolers - Anyone out there know how to prevent bonding of adjacent but chemically unconnected atoms in pymol?
It is possible to go in and unconnected bonds that are nonsense, but that is kind of a pain to do every time. And along those lines, anyone had success with showing a Calpha trace? I tried once but couldn't figure out how to get pymol to connect the individual Calpha atoms. I think this must be easy to do but I couldn't work it out at the time. I tried playing with the bonding_vdw_cutoff setoff (my best guess for how to fix both problems) but didn't see anything happening. Thanks - Byron Byron DeLaBarre, Ph. D. P250 MSLS Building Stanford University (650)736-1714
