Cheom-gil,
(1) sorry, I don't think there's anyway to override the default color.
However, you could use a Python loop to automatically change the colors
of objects with certain names...for example
# save as colordist.py, then run from File menu
for a in cmd.get_names("objects"):
if a[0:5]=='wdist':
cmd.color("blue",a)
# end example
(2) to get the coordinates of the picked (pk1) atom...
# first pick an atom with Ctrl-middle-click, then issue
iterate_state 1,pk1,print (x,y,z)
Cheers,
Warren
--
mailto:[email protected]
Warren L. DeLano, Ph.D.
Principal
DeLano Scientific LLC
Voice (650)-346-1154
Fax (650)-593-4020
-----Original Message-----
From: [email protected]
[mailto:[email protected]] On Behalf Of cheom-gil
cheong
Sent: Saturday, April 12, 2003 8:17 PM
To: [email protected]
Subject: [PyMOL] coloring distance line
Dear All :
When I set lb and rb and then issued distance command, the default color
of
the dotted line and the distance number is yellow. I change this color
everytime after I made distance object to make it easy to see. It is
kind of
tidious job. Can I change the default color of distance object?
I have another question. Can I know xyz coordinate of certain atom in
pymol
without opening pdb file with editing program?
Many thanks in advance..
Cheomgil Cheong, Ph.D.
Research Associate
Department of Molecular Biology
The Scripps Research Institute
[email protected]
[email protected]
_________________________________________________________________
Add photos to your messages with MSN 8. Get 2 months FREE*.
http://join.msn.com/?page=features/featuredemail
-------------------------------------------------------
This SF.net email is sponsored by: Etnus, makers of TotalView, The
debugger
for complex code. Debugging C/C++ programs can leave you feeling lost
and
disoriented. TotalView can help you find your way. Available on major
UNIX
and Linux platforms. Try it free. www.etnus.com
_______________________________________________
PyMOL-users mailing list
[email protected]
https://lists.sourceforge.net/lists/listinfo/pymol-users
