We plan a research project where we want to stepwise incorporate D-amino acids into a peptide. To determine the exchanges it would be very useful if PyMol could assist. If I might dream I would like to have D-amino acids (and maybe other un- usual amino acids) available in the mutation-tool; some simple energy minimization / bond relaxation; storing the resulting molecule in PDB- format. Can I hope ? Is this something others find useful as well ?
Best regards Uwe Hobohm