Eric,
PyMOL will source startup files in your home directory -- just
put your commands in there:
On Mac/Unix:
$HOME/.pymolrc (for PyMOL commands)
$HOME/.pymolrc.py (for Python code)
On Windows:
%HOMEPATH%\pymolrc (for PyMOL commands)
%HOMEPATH%\pymorc.py (for Python code)
To show distances, use the distance wizard:
wizard distance
then ctrl-middle-clock on two atoms in succession.
Cheers,
Warren
--
mailto:[email protected]
Warren L. DeLano, Ph.D.
Principal Scientist
DeLano Scientific LLC
Voice (650)-346-1154
Fax (650)-593-4020
> -----Original Message-----
> From: [email protected]
> [mailto:[email protected]] On Behalf Of Eric Hu
> Sent: Wednesday, November 12, 2003 11:22 AM
> To: [email protected]
> Subject: [PyMOL] Re:labeling atoms in GUI
>
>
> Warren, I want to be able to use those useful
> definations every time I load pymol. I wonder how to
> edit the general startup script pymol in order to do
> that? By the way, I also want pymol to show distance
> when I click two atoms. Thank you.
>
> Eric
>
>
> > Quoting "Warren L. DeLano"
> > <[email protected]>:
> >
> > > Richard,
> > >
> > > It's not GUI, but you could simply bind a function
> > key such as F1 to
> > > that command:
> > >
> > > cmd.set_key('F1',lambda :cmd.label("(lb)",'"%s %s
> > > %s"%(name,resn,resi)'))
> > >
> > > You might then want to bind 'F2' to something
> > which hides all labels.
> > >
> > > cmd.set_key('F2',cmd.label)
> > >
> > > Cheers,
> > > Warren
> > >
> > > --
> > > mailto:[email protected]
> > > Warren L. DeLano, Ph.D.
> > > Principal Scientist
> > > DeLano Scientific LLC
> > > Voice (650)-346-1154
> > > Fax (650)-593-4020
> > >
> > > > -----Original Message-----
> > > > From: [email protected]
> > > > [mailto:[email protected]]
> > On Behalf Of
> > > > [email protected]
> > > > Sent: Wednesday, October 29, 2003 5:14 PM
> > > > To: [email protected]
> > > > Subject: [PyMOL] labeling atoms in GUI
> > > >
> > > >
> > > > Dear All,
> > > >
> > > > I want to look at my structure in PyMOL and,
> > having centered
> > > > on something defined by my selection script,
> > pick atoms
> > > > nearby and see what residues they belong to.
> > That is, I want
> > > > to pick select an atom with the mouse and have
> > its name,
> > > > residue name and residue number appear on
> > screen, like it does in O.
> > > >
> > > > I figured out that [Ctrl] + Left-Mouse-Button
> > selects the
> > > > atom as "lb", and that the command 'label
> > (lb),"%s %s %s" %
> > > > (name,resn,resi)' gives me the label I want. Now
> > how could I
> > > > get something like that to appear as a menu
> > function in the
> > > > GUI so I don't have type it in all the time? Can
> > it be a
> > > > command executed as part of my startup script?
> > > >
> > > > Maybe some function like this already exists,
> > otherwise I
> > > > think it is a very useful thing.
> > > >
> > > > regards,
> > > >
> > > > Richard Baxter
> >
> >
>
>
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