Takefumi,
# If launching PyMOL from an external interpreter, then you need
# these two lines first:
import pymol
pymol.finish_launching()
# If using PyMOL directly, then start here...
from pymol import cmd
# A command like the following
cmd.do("show cartoon")
# is essentially equivalent to:
cmd.show("cartoon")
# end example script
Now, if you save the above in a script.py file, you can
python script.py
assuming that PyMOL has been installed as a Python module.
If using a standalone version of PyMOL, then for synchronous execution,
issue:
pymol script.py
(equivalent to "run script.py" from within PyMOL)
or for asynchronous execution, issue:
pymol -l script.py
(equivalent to "spawn script.py" from within PyMOL)
On Windows use "(pymol-install-path)\pymolwin.exe" instead of "pymol".
Hopefully that answers your question : ). Sorry for the complexity, but
that's the price of flexibility.
Cheers,
Warren
--
mailto:[email protected]
Warren L. DeLano, Ph.D.
Principal Scientist
DeLano Scientific LLC
Voice (650)-346-1154
Fax (650)-593-4020
> -----Original Message-----
> From: [email protected] [mailto:pymol-users-
> [email protected]] On Behalf Of Takefumi Sora
> Sent: Wednesday, January 21, 2004 8:42 AM
> To: [email protected]
> Subject: [PyMOL] How to send pymol command to pymol by python
interpreter
>
>
> Dear Pymol users
>
> I launch Pymol in my python program.
> After that, I can't change objects in pymol in my
> python program. In short I do not know how to
> send pymol command (ex cmd.do("show cartoon")) to
> Pymol not by directly input in pymol external command line
> but by python interpreter.
>
> Does anybody know how to do this ?
>
> Thank you.
> Takefumi SORA
>
>
>
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