Mads,
The only way to accomplish this that I can think of would be to
perform the normal expansion of all symmetry-related molecules within a
cutoff and then use a Python script to delete those objects which don't fit
a criteria.
One such criteria might be the presence of a tell-tale atom or group
in the same plane as the original (trivial if your cell axes are orthogol).
PyMOL functions you'll need:
cmd.get_names('objects')
cmd.get_model(object-name)
cmd.delete(object-name)
Cheers,
Warren
> -----Original Message-----
> From: [email protected]
> [mailto:[email protected]] On Behalf Of
> Mads Gabrielsen
> Sent: Monday, February 23, 2004 5:37 AM
> To: [email protected]
> Subject: [PyMOL] Symmetry
>
> I am trying to create an image of the packing of my structure.
> The ASU is a monomer and the symmetry creates the larger
> quternary complex. I would like to show the packing of these
> larger complexes, but it is to messy if I draw symmtry
> related molecules in all three dimenisons. I would like to be
> able to draw objects on one plane only.
> Is there an easy way of doing this in PyMol or do I need to
> delete all the objects I do not want by hand?
>
> Cheers,
>
>
> --
> ----------------------------------------------------------
> Mads Gabrielsen, MSc
> Research Assistant / PhD Student
>
> WNH-group Phone:(0044) 01382 345 746
> MSIWTB, School of Life Sciences Fax: (0044) 01382 345 764
> University of Dundee E-mail:
> [email protected]
> Scotland
>
>
>
>
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