Hi Warren This is GREAT! I was going to suggest this for the future development, but (as usual :-) you're ahead.
Very good points: * possible to chose between atoms/1-letter residues/3-letter residues etc. * The background color of the scrollbar area shows a complete overview of the selections. Proposals: * sequence colors could (optionally?) match atom (C-alpha) colors in the 3D view. * When a 3D-alignment is done, there is a sequence alignment behind. Having this transferred to the sequence window would be extremely useful. * The heteroatoms should not appear in the sequence windows - at least not in "residue" modes. How are the sequences represented in the data structure? It could be fun to interface with an extrenal modelling program, such as Nest. That goal seems relatively close with this new feature. Cheers, Esben > -----Original Message----- > From: pymol-users-ad...@lists.sourceforge.net > [mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of > Warren DeLano > Sent: 18. maj 2004 10:22 > To: pymol-users@lists.sourceforge.net > Subject: [PyMOL] Linux Beta Version with Sequence Viewer > > > PyMOLers, > > I just finished the first beta version of PyMOL with a > built-in sequence viewer (96beta6) and am looking for some > experienced LINUX PyMOL users who are willing to poke around > with this new stuff and provide feedback or suggestions. > > Screenshot & download at: > http://delsci.com/beta NOTE: don't install this over your main version -- try this in a separate directory instead. Load your favorite structure, click on the "S" on the lower right hand corner to enable the sequence viewer, and then see what you can do with it. Try various button combinations on the sequence, and try mixing in shift and/or control with the left & middle buttons. Please let me know what you think... Cheers, Warren -- mailto:war...@delanoscientific.com Warren L. DeLano, Ph.D. Principal Scientist DeLano Scientific LLC Voice (650)-346-1154 Fax (650)-593-4020 ------------------------------------------------------- This SF.Net email is sponsored by: SourceForge.net Broadband Sign-up now for SourceForge Broadband and get the fastest 6.0/768 connection for only $19.95/mo for the first 3 months! http://ads.osdn.com/?ad_id=2562&alloc_id=6184&op=click _______________________________________________ PyMOL-users mailing list PyMOL-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pymol-users
