Sorry, I responded off the list last time the the question. You have to render two pictures:
1. one with slabbing you want for the surface (include the ligand) 2. one with slabbing you want (change clipping planes only) for the ligand (disable the surface for this) In photoshop (or equivalent), select the ligand for picture #2, copy it and paste it into picture #1. You will probably want to disable shadows for the ray tracing. Ken Quoting Mark Wilke <mwi...@interchange.ubc.ca>: > Is it possible to set 2 different slabs/clipping for two different > objects in pymol? i.e. a surface representation cut at a certain slab > to > reveal the inside of an active site pocket and a stick representation of > a > ligand or something with no slab. I saw a similar question in the > archives but no response. > > - Mark Wilke > > > > ------------------------------------------------------- > This SF.Net email is sponsored by BEA Weblogic Workshop > FREE Java Enterprise J2EE developer tools! > Get your free copy of BEA WebLogic Workshop 8.1 today. > http://ads.osdn.com/?ad_id=5047&alloc_id=10808&op=click > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users >
