Tassos, > 1. How do I make a cartoon passing through Ca's ? It refuses > to do that with default values like for a 'full' PDB file !
set cartoon_flat_sheets, off set cartoon_smooth_loops, off Also, the following command will reduce cartoon "jitter" during animations set cartoon_refine_normals, off > 2. I want to include another single molecule and have frames > where the second molecules 'stays the same' This is actually the default behavior if you load a second PDB file that contains only one state. If it has multiple states, then you'll need to specifically set a state for that object. For example: load animation1.pdb load animation2.pdb set state, 1, animation2 mplay would freeze animation2 at state 1, while playing through animation 2 To change the default freezing behavior for single-state object, set static_singletons, off Cheers, Warren -- mailto:war...@delsci.com Warren L. DeLano, Ph.D. Principal Scientist DeLano Scientific LLC Voice (650)-346-1154 Fax (650)-593-4020 > -----Original Message----- > From: pymol-users-ad...@lists.sourceforge.net > [mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of > Anastassis Perrakis (NKI) > Sent: Monday, September 27, 2004 2:05 AM > To: pymol-users@lists.sourceforge.net > Cc: war...@delanoscientific.com > Subject: [PyMOL] Ca-only and multi-mol PDB > > Dear Warren et al, > > A couple of questions about PyMol: > > When I open a multi-molecule PDB file, it nicely stores every > 'instance' of the PDB in a frame. > This file is coming from the 'Dynamite' server of Martin > Noble and has only Ca's. > > I have two problems: > 1. How do I make a cartoon passing through Ca's ? It refuses > to do that with default values like for a 'full' PDB file ! > 2. I want to include another single molecule and have frames > where the second molecules 'stays the same' > while the first one changes in each frame. Is that easy to do > ? Anyone has a script ? > > Thanks in advance, > > Tassos > > > > ------------------------------------------------------- > This SF.Net email is sponsored by: YOU BE THE JUDGE. Be one > of 170 Project Admins to receive an Apple iPod Mini FREE for > your judgement on who ports your project to Linux PPC the > best. Sponsored by IBM. > Deadline: Sept. 24. Go here: http://sf.net/ppc_contest.php > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users >
