Jamie,

# first, just show sticks

hide all
show sticks

# for uniform-radius balls, use the stick_ball settings

set stick_ball, on
set stick_ball_ratio, 2.5
set stick_radius, 0.12

# for variable radius balls, use scaled spheres

show spheres
set sphere_scale, 0.2
set stick_radius, 0.12

Cheers,
Warren

--
mailto:war...@delsci.com
Warren L. DeLano, Ph.D.
Principal Scientist
DeLano Scientific LLC
400 Oyster Pt. Blvd., Ste 213
South San Francisco, CA 94080
(650)-346-1154  Fax:(650)-593-4020
  

> -----Original Message-----
> From: pymol-users-ad...@lists.sourceforge.net 
> [mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of 
> jwal...@csb.wfu.edu
> Sent: Tuesday, September 28, 2004 2:37 PM
> To: pymol-users@lists.sourceforge.net
> Subject: [PyMOL] Trouble with rendering in ball and stick
> 
> Hi,
> 
> I am having issues with rendering in pymol, and I'm hoping 
> someone out there can help. I am trying to render an image 
> with everything in ball and stick. The problem is that some 
> of the residues/cofactors are rendering as spheres, while 
> others remain in ball and stick. Despite what I try, they 
> still continue to render as spheres. Any advice?
> 
> Jamie Wallen
> 
> 
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