Hi,
Did someone compile pymol successfully on core3 ?
My uname -a is
Linux protein 2.6.8-1.541 #1 Wed Sep 1 18:01:20 EDT 2004 i686 athlon
i386 GNU/Linux .
I just tried to install pymol in my fedora core3 test3 OS.
Other Unix
1. Download the source: pymol-0_97-src.tgz (alternate).
2. Either configure PyMOL to use your existing external
dependencies, or download and compile from sources:
ext-0_95-src.tgz (alternate) includes:
* Python-2.3.3
* Numeric-22.0
* Pmw-1.2
* glut-3.7.6
* tcl-8.4.6
* tk-8.4.6
* libpng-1.2.5
* zlib-1.2.1
3. Compile pymol (see INSTALL file for details).
________________________________________________________________________
在 2004-11-23二的 20:45 -0800，[email protected]写道：
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> Today's Topics:
>
> 1. Re: List participation commentary (Kristian Rother)
> 2. 0.98 beta 18 Selecting bug (Jules Jacobsen)
> 3. PyMol not displaying molecules (Greg Landrum)
> 4. Re: PyMol not displaying molecules (Greg Landrum)
>
> --__--__--
>
> Message: 1
> From: Kristian Rother <[email protected]>
> Organization: Charite Berlin
> To: [email protected]
> Date: Tue, 23 Nov 2004 07:58:58 +0000
> Subject: [PyMOL] Re: List participation commentary
>
> On Monday 22 November 2004 18:49, Cameron Mura wrote:
> > >Ultimately the mailing list serves as a form of living manual to the
> > > program, so it would be nice to preserve as many of these insights as
> > > possible!
>
> Well, i have written up and sorted a number of answers to common problems o=
> n=20
> my homepage. However, it's far away from being a wiki. Neither it is comple=
> te=20
> in any way.
>
> http://www.rubor.de/bioinf/pymol_tips.html
>
> Yours,
>
> Kristian Rother
> Humboldt Universit=E4t Berlin
>
>
> --__--__--
>
> Message: 2
> Date: Tue, 23 Nov 2004 11:26:43 +0000
> From: Jules Jacobsen <[email protected]>
> To: [email protected]
> Subject: [PyMOL] 0.98 beta 18 Selecting bug
>
> Oops! sorry, I just realized that the .pse was quite large. My apologies.
>
> The pdbs used were 1hju, 1hjs and 1hjq. The following script will
> produce the same pse:
>
> select Binding, (resi 86,300)
> label Binding and elem o, (resn+'-'+resi)
> zoom Binding
>
>
> Jules
>
> -------- Original Message --------
> Subject: 0.98 beta 18 Selecting
> Date: Tue, 23 Nov 2004 11:05:01 +0000
> From: Jules Jacobsen <[email protected]>
> To: [email protected]
>
> Hi all,
>
> Has anyone else had the problem of not being able to select several
> identical residue types in aligned structures? eg in the .pse included,
> if you single left-click on Trp-86 (the left one of the 'Binding'
> selection) and try to select them all in the same manner, PyMOL won't
> add any more residues to the selection if it has the same resn/resi. It
> will select them if you use a shift-left-click. It will however, happily
> remove them from the selection with a single left-click.
>
> I'm guessing this is a PyMOL rather than platform specific bug? (I'm
> running on WinXP)
>
> Cheers,
>
> Jules
>
>
>
>
> --__--__--
>
> Message: 3
> Date: Tue, 23 Nov 2004 17:11:54 -0800
> To: [email protected]
> From: Greg Landrum <[email protected]>
> Subject: [PyMOL] PyMol not displaying molecules
>
>
> I've encountered a problem where PyMol will no longer display molecules
> using normal rendering on my machine. (Symptoms: I load a molecule and see
> nothing, but if I raytrace the image, the result looks fine). I've
> verified that this happens in pymol versions 0.97 and 0.98beta18.
>
> System details:
> OS: Win2K
> Graphics Card: Radeon 7000 series
> Graphics Driver: the most recent ATI driver suite (6.14.10.6483).
>
> I'm not 100% certain, but I am pretty sure that the problem dates to my
> update of the graphics driver. Any suggestions as to how I might work
> around this problem?
>
> Here's PyMol's startup output, in case that's useful:
>
> PyMOL(TM) Molecular Graphics System, Version 0.98beta18.
> Copyright (C) 2004 by DeLano Scientific LLC.
> All Rights Reserved.
>
> Created by Warren L. DeLano, Ph.D.
>
> Other Major Authors and Contributors:
>
> Ralf W. Grosse-Kunstleve, Ph.D.
>
> PyMOL is user-supported open-source software. Although most versions
> are freely available, PyMOL is not in the public domain.
>
> If PyMOL is helpful in your work or study, then please volunteer
> support for our ongoing campaign to create open and affordable software
> for molecular research.
>
> Updates and other information can be found at "http://www.pymol.org";.
>
> Please cite PyMOL in publications and presentations:
>
> Warren L. DeLano "The PyMOL Molecular Graphics System."
> DeLano Scientific LLC, San Carlos, CA, USA. http://www.pymol.org
>
> Enter "help" for a list of commands.
> Enter "help <command-name>" for information on a specific command.
>
> Hit ESC anytime to toggle between text and graphics.
>
> OpenGL-based graphics engine:
> GL_VENDOR: ATI Technologies Inc.
> GL_RENDERER: RADEON 7000 DDR x86/SSE2
> GL_VERSION: 1.3.4650 Win2000 Release
>
> Thanks in advance for any help,
> -greg
>
> ----
> greg Landrum ([email protected])
> Software Carpenter/Computational Chemist
>
>
>
> --__--__--
>
> Message: 4
> Date: Tue, 23 Nov 2004 20:08:33 -0800
> To: [email protected]
> From: Greg Landrum <[email protected]>
> Subject: Re: [PyMOL] PyMol not displaying molecules
>
> At 05:11 PM 11/23/2004, I wrote:
>
> >I'm not 100% certain, but I am pretty sure that the problem dates to my
> >update of the graphics driver. Any suggestions as to how I might work
> >around this problem?
>
> For what it's worth, when I go back to an older version of the ATI driver
> (6.14.10.6343, dated 4/28/2003), everything works fine.
>
> -greg
>
> ----
> greg Landrum ([email protected])
> Software Carpenter/Computational Chemist
>
>
>
>
> --__--__--
>
> _______________________________________________
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>
> End of PyMOL-users Digest
--
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Wellcome to MDL [email protected]
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