Hi Jianhai,
load yourmap.xplor
isomesh map1, yourmap, 1.5, LIGAND, carve=1.6
color green, map1
show mesh, map1
The carve command allows you to selectively show density around
whatever selection you want.
I hope this gives you some ideas. You can also type "help isomesh" in
the GUI to get a bit more detail about the various options available
for the isomesh command.
Scott
On Apr 13, 2005, at 2:32 PM, Jianghai Zhu wrote:
Hi, all,
Is there a way in Pymol to draw electron density only around my ligand?
Thanks.
Jianghai
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Scott Classen, Ph.D.
ACS Postdoctoral Fellow
Department of Molecular & Cell Biology
University of California, Berkeley
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