nvidia 7167 & 7174 drivers seem to have issues (see previous e-mails in this list) VMD is also affected, but not many other openGL programs. (i can run SPECperf just fine)
The issue you see here may be related to some other non-pymol issues i've seen on my machine. my vendor said my other issues may be caused by the nvidia driver overwriting some kernel space. when/if i can, i'll e-mail the solution. MK pymol-users-ad...@lists.sourceforge.net wrote on 05/26/2005 05:16:56: > Do you have nvidia drivers? > If so, may be you came across the same problem I have: > > I have installed the latest version of Mandriva Linux on a AMD > Athlon(tm) MP 2400+ PC with > a Quadro4 900 XGL graphich card and the NVIDIA-Linux-x86-1.0-7174 driver > > When I run pymol and load a pdb file, the program crashes with the > following message: > > CmdLoad: "GLGA/sup_models/pdb1rzu.ent" loaded as "pdb1rzu". > *** glibc detected *** double free or corruption (!prev): 0x08a76ba0 *** > /usr/local/pymol-0.98-precompiled/pymol.com: line 14: 16877 > Aborted (core dumped) $PYMOL_PATH/pymol.exe $* > > However, if I set auto_show_lines=off and auto_show_nonbonded=off BEFORE > loading the molecule, the program loads the PDB file without crashing > (and without showing any graphical object, of course). Then, I can use > the "show" command/button for any type of representation (ribbons, > nonbonded, sticks, ...) EXCEPT the "lines" representation, which causes > a program crash. > > This happens with both distributed binary and self compiled PyMol > versions. I have tried version 0.97 and 0.98 with the same results. > > Then, browsing the internet, I came across the following message from > Warren: > > http://sourceforge.net/mailarchive/message.php?msg_id=11735911 > > and I decided to try the 0_99beta01 version > (http://delsci.com/beta/pymol-0_99beta01-bin-linux-x86-nvidia-test.tgz), > which seems to solve my problem for the moment. > > > > gerwald jogl wrote: > > > Hi everyone, > > > > Just wanted to send in a description of the following situation: > > I was using pymol 0.98 precompiled on FC3 today and did an automatic > > update during the day (therefore, sorry but I don't know which > > packages where upgraded :-( > > Afterwards, pymol would start up, but core dump immediately after > > loading a pdb file. > > The same is happening with the 0.97 precompiled version and with my > > own compile of the 0.98 source code. > > This is what I get: > > /xsoft/pymol-0.97precompiled/pymol.com: line 14: 19692 Segmentation > > fault (core dumped) $PYMOL_PATH/pymol.exe $* > > > > or my compile: > > /xsoft/pymol-0.98/pymol.com: line 2: 19785 Segmentation fault > > (core dumped) /usr/bin/python > > /usr/lib/python2.3/site-packages/pymol/__init__.py $* > > > > > > Any comments on this would be greatly appreciated... > > Gerwald > > > > > > ------------------------------------------------------- > > SF.Net email is sponsored by: GoToMeeting - the easiest way to > > collaborate > > online with coworkers and clients while avoiding the high cost of > > travel and > > communications. There is no equipment to buy and you can meet as often as > > you want. Try it > > free.http://ads.osdn.com/?ad_id=7402&alloc_id=16135&op=click > > _______________________________________________ > > PyMOL-users mailing list > > PyMOL-users@lists.sourceforge.net > > https://lists.sourceforge.net/lists/listinfo/pymol-users > > > > -- > > -------------------------------------------------- > Stefano Trapani, PhD > > Laboratoire de Virologie Moleculaire & Structurale > UMR 2472 CNRS-GIF > 1 Av. de la Terrasse, Bat. 14 B > 91198 Gif-sur-Yvette FRANCE > > phone: ++33 1 6982.3856 > FAX: ++33 1 6982.4308 > -------------------------------------------------- > > > [attachment "trapani.vcf" deleted by Michael Kutz/TTP]
