Binging, There aren't any volume computations in PyMOL...
To set radii, use the alter command *after* loading the molecule alter elem c, vdw=1.9 alter elem n, vdw=1.8 alter elem o, vdw=1.7 rebuild Cheers, Warren -- Warren L. DeLano, Ph.D. Principal Scientist . DeLano Scientific LLC . 400 Oyster Point Blvd., Suite 213 . South San Francisco, CA 94080 USA . Biz:(650)-872-0942 Tech:(650)-872-0834 . Fax:(650)-872-0273 Cell:(650)-346-1154 . mailto:war...@delsci.com > -----Original Message----- > From: pymol-users-ad...@lists.sourceforge.net > [mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of > Bingding Huang > Sent: Monday, June 06, 2005 12:51 AM > To: PYMOLBB > Subject: [PyMOL] vdw volume > > Hi, > How to get the vdw volume of a selection in pymol and how to > set different radii for atoms? > > Thanks > > Bingding > > -- > Bingding Huang > PhD student > Bioinformatics group > Biotec & Department of Computing > Tazberg 47, 01307 > TU Dresden, Germany > > Tel: 0049 351 46340064 (Office) > Tel: 0049 351 4403368 (Home) > Fax: 0049 351 46340061 > Mobile: 01772981375 > E-mail: bhu...@biotec.tu-dresden.de > > > > ------------------------------------------------------- > This SF.Net email is sponsored by: NEC IT Guy Games. How far > can you shotput a projector? How fast can you ride your desk > chair down the office luge track? > If you want to score the big prize, get to know the little guy. > Play to win an NEC 61" plasma display: > http://www.necitguy.com/?r=20 > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users >
