Many thanks for the suggestion. I worked something up using CNS/
python scripts -- but if anyone comes up with an all PyMOL
alternative, please share with the list!
Doug
On Jul 20, 2005, at 1:18 PM, Cartailler, Jean-Philippe wrote:
One way to do this would be to calculate RMSD between your models
(using
whatever package) and replace the B-factor column with those values
(make sure you respect the PDB format (B-factors are in columns 61
- 66,
with first column as "1" - see
http://www.rcsb.org/pdb/docs/format/pdbguide2.2/part_62.html for
details), load that into pymol, and voila. If the effect isn't
enough,
you could always multiply your RMS values by some value (eg. 10).
Good
luck!
JP Cartailler
-----Original Message-----
From: pymol-users-ad...@lists.sourceforge.net
[mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of Douglas
Kojetin
Sent: Tuesday, July 19, 2005 3:48 PM
To: pymol
Subject: [PyMOL] putty/sausage NMR figure
Hello All-
From what I've read, the 'cartoon putty' command uses the PDB B-
factor
value to determine the appearance of the sausage diagram. How can
I use
the 'cartoon putty' command with NMR structures in a way that
represents
the structure ensemble, similar to that as the MOLMOL sausage diagram?
Thanks,
Doug
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