Hi Marc, I think I've come across the same problem when looking at your molecule as a cartoon, sphere, or surface. It seems to be related to two transparency settings within pymol. Maybe it's a bug??
Search for my name on the list. The only two replies I have ever posted pertain to this. Also, you should post your hardware so that if this is a bug, it can more easily be tracked down and squashed. Cheers, Michelle Gill Graduate Student Molecular Biophysics and Biochemistry Yale University Content-Type=message/rfc822 Content-Description=embedded message From: Marc Vogt <mv...@es.chem.umass.edu> To: PyMOL-users@lists.sourceforge.net Date: Tue, 16 Aug 2005 17:52:48 -0400 (EDT) Subject: [PyMOL] display problem (slab?) Hi all For some reason I am now having a strange problem when I use pymol to display molecules. It acts sort of like it is in slab mode where some of the molecule fades into nothingness. However, when I spin the molecule, the same regions remain invisible. If it were a true slab effect, the regions that I spin into the slab would become visible and the ones out would be invisible. I wouldn't worry about it and would just restart the program to eliminate the setting, but for some reason it seems to now be a default and happens no matter what I do. I think I'm just missing something really silly, but I can't catch it. Any ideas on how to restore normal function? thanks, Marc
