Hi Chung-Ming Yu, You can change the secondary structure identifiers as follows:
alter helix_selection,ss='H' alter sheet_selection,ss='S' alter loop_selection, ss='L' The RMS deviation gives you information about the quality of the fit. The lower the number, the better the fit. Cheers, Tsjerk On 10/8/05, yucmbuu <yucm...@gate.sinica.edu.tw> wrote: > > Dear All: > > I made two protein models from one known pdb by using SWISS-MODEL server. > I > superimpose these three pdb with pymol. However, I need to modified the > secondary structure of these structures after "procheck". How could I > using > "alter" command to modified one structure at once? Is it meaningful that > RMS scores were obtained by using "align" command in pymol? Thanks for > your > help. > > Chung-Ming Yu > Inst. Biol. Chem. > Academia Sinica > > > > > ------------------------------------------------------- > This SF.Net email is sponsored by: > Power Architecture Resource Center: Free content, downloads, discussions, > and more. http://solutions.newsforge.com/ibmarch.tmpl > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users > -- Tsjerk A. Wassenaar, M.Sc. Groningen Biomolecular Sciences and Biotechnology Institute (GBB) Dept. of Biophysical Chemistry University of Groningen Nijenborgh 4 9747AG Groningen, The Netherlands +31 50 363 4336
