Yes, dist name, sele1, sele2, mode=2
eg. load $TUT/1hvp.pdb dist name, solvent, protein, mode=2 Cheers, Warren -- Warren L. DeLano, Ph.D. Principal Scientist . DeLano Scientific LLC . 400 Oyster Point Blvd., Suite 213 . South San Francisco, CA 94080 USA . Biz:(650)-872-0942 Tech:(650)-872-0834 . Fax:(650)-872-0273 Cell:(650)-346-1154 . mailto:war...@delsci.com > -----Original Message----- > From: pymol-users-ad...@lists.sourceforge.net > [mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of > Marc Bruning > Sent: Tuesday, October 18, 2005 5:03 AM > To: pymol-users@lists.sourceforge.net > Cc: Warren DeLano; Michael Weber > Subject: Re: [PyMOL] automated H-bond computation & > visualization in pyMOL? > > hello, > > is this feature accessible from the command line as well? > > cheers, > marc > > On Monday 17 October 2005 22:16, Warren DeLano wrote: > > Michael > > > > d/l a recent build http://delsci.com/beta > > > > and use the "find"->"polar contacts" option under the > objects Action "A" > > menu in the viewer window. > > > > Cheers, > > Warren > > > > > > -- > > Warren L. DeLano, Ph.D. > > Principal Scientist > > > > . DeLano Scientific LLC > > . 400 Oyster Point Blvd., Suite 213 > > . South San Francisco, CA 94080 USA > > . Biz:(650)-872-0942 Tech:(650)-872-0834 . Fax:(650)-872-0273 > > Cell:(650)-346-1154 . mailto:war...@delsci.com > > > > > -----Original Message----- > > > From: pymol-users-ad...@lists.sourceforge.net > > > [mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of > > > Michael Weber > > > Sent: Monday, October 17, 2005 5:03 AM > > > To: pymol-users@lists.sourceforge.net > > > Subject: [PyMOL] automated H-bond computation & visualization in > > > pyMOL? > > > > > > Hello everybody, > > > I am new to PyMOL and I have a short question: In pyMOL - is it > > > possible to automatically compute and visualize H-bonds in .PDB > > > files as it is e.g. possible in SWISS-PDB-VIEWER? Maybe > there is a > > > pyMOL script for this purpose? I need such a function for my work > > > with catalytically active RNA molecules (e.g. PDB # 2A2E, 2A64, > > > 1NBS, 1U9S). Would be nice if someone could help me with this > > > problem... > > > > > > All the best & thanks in advance, > > > Michael. > > > > ------------------------------------------------------- > > This SF.Net email is sponsored by: > > Power Architecture Resource Center: Free content, downloads, > > discussions, and more. http://solutions.newsforge.com/ibmarch.tmpl > > _______________________________________________ > > PyMOL-users mailing list > > PyMOL-users@lists.sourceforge.net > > https://lists.sourceforge.net/lists/listinfo/pymol-users > > > ------------------------------------------------------- > This SF.Net email is sponsored by: > Power Architecture Resource Center: Free content, downloads, > discussions, and more. http://solutions.newsforge.com/ibmarch.tmpl > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users > > > >
