Hi Marcus, > The surface rendering in PyMOL is quite nice, but I cannot separate the > "branches" of the surface. That is, I would like to view a large cavity > inside of a protein independently from the outer, solvent accessible > surface. Is anyone aware of a means to do this?
The easiest way I'm aware of is to select the residues involved on the surface of your cavity, and then do show surface, [selection]. Pete Pete Meyer Fu Lab BMCB grad student Cornell University
