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Today's Topics:
1. OS X 10.4.3 comment (Mark A Saper)
2. Re: Mac OS X 10.4.3 (Brian J Goodfellow)
3. Re: problem with CASTp plugin (Sebastien Moretti)
4. Re: PyMOL-users digest, Vol 1 #1049 - 6 msgs (Jesper Karlsen)
5. Re: macpymol beta 21 bug? (Martin Montgomery)
6. Re: Re: macpymol beta 21 bug? (khin...@cea.fr)
7. Re: Re: macpymol beta 21 bug? (Martin Montgomery)
--__--__--
Message: 1
From: Mark A Saper <sa...@umich.edu>
Date: Thu, 3 Nov 2005 23:53:30 -0500
To: pymol-users@lists.sourceforge.net
Subject: [PyMOL] OS X 10.4.3 comment
Quite a shock to read about the OS X 10.4.3 problem. I upgraded
without a second thought and now I have the same problem on my 12"
powerbook. This is with beta14 I believe.
When I try the single window beta19 it seems to be less of a problem.
-Mark
_________________________________
Mark A. Saper, Ph.D.
Associate Professor of Biological Chemistry
Biophysics Research Division, University of Michigan
Chemistry Building Room 3040
930 N University Ave
Ann Arbor MI 48109-1055 U.S.A.
sa...@umich.edu (734) 764-3353 fax (734) 764-3323
http://www.biochem.med.umich.edu/biochem/research/profiles/saper.html
--__--__--
Message: 2
Cc: pymol-users@lists.sourceforge.net
From: Brian J Goodfellow <brian.goodfel...@dq.ua.pt>
Subject: Re: [PyMOL] Mac OS X 10.4.3
Date: Fri, 4 Nov 2005 09:00:07 +0000
To: Warren DeLano <war...@delsci.com>
Warren,
with 0.99beta25 the problem still exists. After loading a molecule =20
there's no flickering but if I do a ray trace then the flickering =20
starts when I rotate. Shifting the window stops the flickering.
By running show cartoon after loading I can also get the
flickering. =20
Again, moving the window stops it.
Brian
On Nov 4, 2005, at 3:40 AM, Warren DeLano wrote:
Brian,
Can you confirm that this problem exists in the very latest beta?
=20
I can't reproduce on my iMac G5
http://delsci.com/beta
Is there any special trick to get it to happen?
Cheers,
Warren
--
Warren L. DeLano, Ph.D.
Principal Scientist
. DeLano Scientific LLC
. 400 Oyster Point Blvd., Suite 213
. South San Francisco, CA 94080 USA
. Biz:(650)-872-0942 Tech:(650)-872-0834
. Fax:(650)-872-0273 Cell:(650)-346-1154
. mailto:war...@delsci.com
-----Original Message-----
From: pymol-users-ad...@lists.sourceforge.net
[mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of
Brian J Goodfellow
Sent: Thursday, November 03, 2005 2:17 PM
To: pymol-users@lists.sourceforge.net
Subject: [PyMOL] Mac OS X 10.4.3
Hi Mac users,
has anyone noticed an annoying flickering appearing when
rotating a molecule in PymolX11 and MacPyMOL under 10.4.3
that wasn't present under 10.4.2? The problem appears on both
my iBookG4 and iMacG5. If the window is moved then the
flickering disappears. However, if a ray trace is then drawn
the problem starts again until the window is moved again -
very annoying!
Brian Goodfellow
*******************************************
Brian J Goodfellow
Departamento de Qu=CCmica
Universidade de Aveiro
3810-193 Aveiro, Portugal
Tel: +351 234 401506, Fax: +351 234 370084
http://www.dq.ua.pt/ingles/index_mem.htm
*******************************************
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--__--__--
Message: 3
Date: Fri, 04 Nov 2005 10:59:11 +0100
From: Sebastien Moretti <sebastien.more...@igs.cnrs-mrs.fr>
To: jermainejenk...@netscape.net,
pymol-users <pymol-users@lists.sourceforge.net>
Subject: Re: [PyMOL] problem with CASTp plugin
Hello,=20
We are running Python v2.2.3 on Red Hat Enterprise 3 which is
almost=
=20
like Red Hat 9 and/or Fedora Core 1. Our RedHat version seems to
be=20
choking on the pyc file. The following is the error we get.
=20
Exception in plugin 'CASTpyMOL' -- Traceback follows...
Traceback (most recent call last):
File "modules/pmg_tk/PMGApp.py", line 109, in initialize_plugins
ImportError: Bad magic number in=20
/usr/lib/python2.2/site-packages/pymol/modules/pmg_tk/startup/
CASTpyMOL=
.
pyc
Error: unable to initialize plugin 'CASTpyMOL'.
=20
=20
We have contacted the plugin authors but have been unable to solve
this=
=20
problem.
=20
Thanks,
JJ
Hello,
We use CASTpyMOL.pyc file, for Linux, on Suse. It works fine.
The .pyc files are python compiled code and they should work only
for=20
python and PyMOL versions they have been compiled for.
So, CASTpyMOL.pyc file is for PyMOL 0.98 and must be moved in the=20
PYMOL_HOME/modules/pmg_tk/startup/ directory.
Try a binary version of PyMOL, it embeds its own python interpreter.
Maybe this will resolve your problem.
--=20
S=E9bastien Moretti
http://www.igs.cnrs-mrs.fr/
CNRS - IGS
31 chemin Joseph Aiguier
13402 Marseille cedex
--__--__--
Message: 4
Date: Fri, 04 Nov 2005 11:55:27 +0100
From: Jesper Karlsen <je...@bioxray.dk>
To: pymol-users@lists.sourceforge.net
Subject: [PyMOL] Re: PyMOL-users digest, Vol 1 #1049 - 6 msgs
HI Mac users,
Brian Goodfellow wrote:
has anyone noticed an annoying flickering appearing when rotating
a =20
molecule in PymolX11 and MacPyMOL under 10.4.3 that wasn't present
=20
under 10.4.2? The problem appears on both my iBookG4 and iMacG5.
If =20
the window is moved then the flickering disappears. However, if a
ray =20=
The 10.4.3 update included a display driver update.
Just go to ati's homepage (http://ati.com) and download the latest
driver for you card. After this everything should be back to normal.
Jesper Karlsen
--__--__--
Message: 5
Cc: pymol-users@lists.sourceforge.net
From: Martin Montgomery <m...@mrc-dunn.cam.ac.uk>
Date: Fri, 4 Nov 2005 11:38:47 +0000
To: "Warren DeLano" <war...@delsci.com>
Subject: [PyMOL] Re: macpymol beta 21 bug?
--Apple-Mail-1-325788267
Content-Transfer-Encoding: 7bit
Content-Type: text/plain;
charset=US-ASCII;
delsp=yes;
format=flowed
Hi Warren,
Tested 99beta21 and 99beta25 on a dual 2.5 with ATI 9800 XT (256 MB)
with 10.4.2 and it works fine. After upgrading to 10.4.3 on that
machine, everything is still fine.
Also tried 99beta25 on my machine (ATI 9600 Pro - 64MB) and that
still has a problem. I then booted into my back up clone which is at
10.4.2 and 99beta21 and 99beta25 work just fine. So the 64MB ATI
cards look to be dodgy under 10.4.3 whilst the better spec ATI ones
are OK. Will try and find a nVidia 64MB equipped mac for comparison.
Having just read Jesper's email regarding getting drivers at ATI's
website, I had a look and there are no mac drivers available as far
as I can see. Only the ATI Displays software. After installing this
on my machine, nothing has changed. The molecule loads fine and the
window behaves in "default" line representation but when I change to
cartoon (or any other) representation, the window flickers badly.
Cheers
MGM
On 4 Nov 2005, at 03:48, Warren DeLano wrote:
Martin,
10.4.3 is one ingredient in this problem -- ATI may be
another...still
trying to reproduce it here, but so far all our nVidia-based 10.4.3
machines are doing just fine.
Cheers,
Warren
--
Warren L. DeLano, Ph.D.
Principal Scientist
. DeLano Scientific LLC
. 400 Oyster Point Blvd., Suite 213
. South San Francisco, CA 94080 USA
. Biz:(650)-872-0942 Tech:(650)-872-0834
. Fax:(650)-872-0273 Cell:(650)-346-1154
. mailto:war...@delsci.com
-----Original Message-----
From: Martin Montgomery [mailto:m...@mrc-dunn.cam.ac.uk]
Sent: Thursday, November 03, 2005 5:08 AM
To: Warren DeLano
Subject: macpymol beta 21 bug?
Hi Warren,
I'm having a problem with 0.99 beta 21. I get an occasional
glitch where the graphics pane and GUI flickers badly when I
move/zoom the molecule. This can be temporarily corrected by
resizing the window and typing reset. However sometimes,
after a little while, the flicker returns. The "brushed
metal" surround of the window does not flicker nor does the
text pane. One possible cause is that I have updated to
10.4.3 and am not sure whether the problem also occurred in
10.4.2 but I could boot into my backup clone and check.
10.4.3 has meant that the fans are running more often even
when the computer is doing very little.
I've got a Dual 2Ghz G5 with 3.5G RAM and the stock Radeon
9600 Pro 64mB RAM graphics card into a Cinema 20" display.
Cheers
MGM
Martin Montgomery
Director's Group
MRC Dunn Human Nutrition Unit
Hills Road
Cambridge
CB2 2XY
--Apple-Mail-1-325788267
Content-Transfer-Encoding: quoted-printable
Content-Type: text/html;
charset=ISO-8859-1
<HTML><BODY style=3D"word-wrap: break-word; -khtml-nbsp-mode: space; =
-khtml-line-break: after-white-space; ">Hi Warren,<DIV><BR =
class=3D"khtml-block-placeholder"></DIV><DIV>Tested 99beta21 and =
99beta25 on a dual 2.5 with ATI 9800 XT (256 MB) with 10.4.2 and it =
works fine.=A0 After upgrading to 10.4.3 on that machine,
everything is =
still fine.=A0=A0<DIV><BR =
class=3D"khtml-block-placeholder"></DIV><DIV>Also tried 99beta25 on
my =
machine (ATI 9600 Pro - 64MB) and that still has a problem.=A0 I
then =
booted into my back up clone which is at 10.4.2 and 99beta21 and =
99beta25 work just fine.=A0 So the 64MB ATI cards look to be dodgy
under =
10.4.3 whilst the better spec ATI ones are OK.=A0 Will try and find
a =
nVidia 64MB equipped mac for comparison.</DIV><DIV><BR =
class=3D"khtml-block-placeholder"></DIV><DIV>Having just read
Jesper's =
email regarding getting drivers at ATI's website, I had a look and
there =
are no mac drivers available as far as I can see.=A0 Only the ATI =
Displays software.=A0 After installing this on my machine, nothing
has =
changed.=A0=A0The molecule loads fine and the window behaves in =
"default" line representation but when I change to cartoon (or any =
other) representation, the window flickers badly.</DIV><DIV><BR =
class=3D"khtml-block-placeholder"></DIV><DIV><BR =
class=3D"khtml-block-placeholder"></DIV><DIV>Cheers</DIV><DIV><BR =
class=3D"khtml-block-placeholder"></DIV><DIV>MGM</DIV><DIV><BR =
class=3D"khtml-block-placeholder"></DIV><DIV><BR =
class=3D"khtml-block-placeholder"></
DIV><DIV><DIV><DIV><BR><DIV><DIV>On =
4 Nov 2005, at 03:48, Warren DeLano wrote:</DIV><BR =
class=3D"Apple-interchange-newline"><BLOCKQUOTE type=3D"cite"><DIV =
style=3D"margin-top: 0px; margin-right: 0px; margin-bottom: 0px; =
margin-left: 0px; ">Martin,</DIV><DIV style=3D"margin-top: 0px; =
margin-right: 0px; margin-bottom: 0px; margin-left: 0px; min-height: =
14px; "><BR></DIV><DIV style=3D"margin-top: 0px; margin-right: 0px; =
margin-bottom: 0px; margin-left: 0px; ">10.4.3 is one ingredient in
this =
problem -- ATI may be another...still</DIV><DIV style=3D"margin-top: =
0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px;
">trying =
to reproduce it here, but so far all our nVidia-based 10.4.3</
DIV><DIV =
style=3D"margin-top: 0px; margin-right: 0px; margin-bottom: 0px; =
margin-left: 0px; ">machines are doing just fine.</DIV><DIV =
style=3D"margin-top: 0px; margin-right: 0px; margin-bottom: 0px; =
margin-left: 0px; min-height: 14px; "><BR></DIV><DIV
style=3D"margin-top: =
0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; =
">Cheers,</DIV><DIV style=3D"margin-top: 0px; margin-right: 0px; =
margin-bottom: 0px; margin-left: 0px; ">Warren</DIV><DIV =
style=3D"margin-top: 0px; margin-right: 0px; margin-bottom: 0px; =
margin-left: 0px; min-height: 14px; "><BR></DIV><DIV
style=3D"margin-top: =
0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; =
min-height: 14px; "><BR></DIV><DIV style=3D"margin-top: 0px; =
margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">--</
DIV><DIV =
style=3D"margin-top: 0px; margin-right: 0px; margin-bottom: 0px; =
margin-left: 0px; ">Warren L. DeLano, Ph.D.<SPAN =
class=3D"Apple-converted-space">=A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0
=A0 =
=A0</SPAN></DIV><DIV style=3D"margin-top: 0px; margin-right: 0px; =
margin-bottom: 0px; margin-left: 0px; ">Principal Scientist</
DIV><DIV =
style=3D"margin-top: 0px; margin-right: 0px; margin-bottom: 0px; =
margin-left: 0px; min-height: 14px; "><BR></DIV><DIV
style=3D"margin-top: =
0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">.
DeLano =
Scientific LLC <SPAN class=3D"Apple-converted-space">=A0</SPAN></
DIV><DIV =
style=3D"margin-top: 0px; margin-right: 0px; margin-bottom: 0px; =
margin-left: 0px; ">. 400 Oyster Point Blvd., Suite 213<SPAN =
class=3D"Apple-converted-space">=A0 =A0 =A0 =A0 =A0 =A0</SPAN></
DIV><DIV =
style=3D"margin-top: 0px; margin-right: 0px; margin-bottom: 0px; =
margin-left: 0px; ">. South San Francisco, CA 94080 USA<SPAN =
class=3D"Apple-converted-space">=A0 =A0</SPAN></DIV><DIV =
style=3D"margin-top: 0px; margin-right: 0px; margin-bottom: 0px; =
margin-left: 0px; ">. Biz:(650)-872-0942<SPAN =
class=3D"Apple-converted-space">=A0 </SPAN>Tech:(650)-872-0834<SPAN =
class=3D"Apple-converted-space">=A0 =A0 =A0</SPAN></DIV><DIV =
style=3D"margin-top: 0px; margin-right: 0px; margin-bottom: 0px; =
margin-left: 0px; ">. Fax:(650)-872-0273<SPAN =
class=3D"Apple-converted-space">=A0 </SPAN>Cell:(650)-346-1154</
DIV><DIV =
style=3D"margin-top: 0px; margin-right: 0px; margin-bottom: 0px; =
margin-left: 0px; ">. <A =
href=3D"mailto:war...@delsci.com";>mailto:war...@delsci.com</A> <SPAN =
class=3D"Apple-converted-space">=A0 =A0 =A0</SPAN></DIV><DIV =
style=3D"margin-top: 0px; margin-right: 0px; margin-bottom: 0px; =
margin-left: 0px; min-height: 14px; "><BR></DIV><DIV
style=3D"margin-top: =
0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; =
min-height: 14px; "><BR></DIV> <BLOCKQUOTE type=3D"cite"><DIV =
style=3D"margin-top: 0px; margin-right: 0px; margin-bottom: 0px; =
margin-left: 0px; ">-----Original Message-----</DIV><DIV =
style=3D"margin-top: 0px; margin-right: 0px; margin-bottom: 0px; =
margin-left: 0px; ">From: Martin Montgomery [<A =
href=3D"mailto:m...@mrc-dunn.cam.ac.uk";>mailto:m...@mrc-
dunn.cam.ac.uk</A>]<=
SPAN class=3D"Apple-converted-space">=A0</SPAN></DIV><DIV =
style=3D"margin-top: 0px; margin-right: 0px; margin-bottom: 0px; =
margin-left: 0px; ">Sent: Thursday, November 03, 2005 5:08 AM</
DIV><DIV =
style=3D"margin-top: 0px; margin-right: 0px; margin-bottom: 0px; =
margin-left: 0px; ">To: Warren DeLano</DIV><DIV style=3D"margin-top: =
0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px;
">Subject: =
macpymol beta 21 bug?</DIV><DIV style=3D"margin-top: 0px; margin-
right: =
0px; margin-bottom: 0px; margin-left: 0px; min-height: 14px; =
"><BR></DIV><DIV style=3D"margin-top: 0px; margin-right: 0px; =
margin-bottom: 0px; margin-left: 0px; ">Hi Warren,</DIV><DIV =
style=3D"margin-top: 0px; margin-right: 0px; margin-bottom: 0px; =
margin-left: 0px; min-height: 14px; "><BR></DIV><DIV
style=3D"margin-top: =
0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">I'm =
having a problem with 0.99 beta 21.<SPAN class=3D"Apple-converted-
space">=A0=
</SPAN>I get an occasional<SPAN =
class=3D"Apple-converted-space">=A0</SPAN></DIV><DIV
style=3D"margin-top: =
0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px;
">glitch =
where the graphics pane and GUI flickers badly when I<SPAN =
class=3D"Apple-converted-space">=A0</SPAN></DIV><DIV
style=3D"margin-top: =
0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; =
">move/zoom the molecule.<SPAN class=3D"Apple-converted-space">=A0 =
</SPAN>This can be temporarily corrected by<SPAN =
class=3D"Apple-converted-space">=A0</SPAN></DIV><DIV
style=3D"margin-top: =
0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px;
">resizing =
the window and typing reset.<SPAN class=3D"Apple-converted-
space">=A0 =
</SPAN>However sometimes,<SPAN =
class=3D"Apple-converted-space">=A0</SPAN></DIV><DIV
style=3D"margin-top: =
0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px;
">after a =
little while,<SPAN class=3D"Apple-converted-space">=A0 </SPAN>the =
flicker returns.<SPAN class=3D"Apple-converted-space">=A0 </SPAN>The =
"brushed<SPAN class=3D"Apple-converted-space">=A0</SPAN></DIV><DIV =
style=3D"margin-top: 0px; margin-right: 0px; margin-bottom: 0px; =
margin-left: 0px; ">metal" surround of the window does not flicker
nor =
does the<SPAN class=3D"Apple-converted-space">=A0</SPAN></DIV><DIV =
style=3D"margin-top: 0px; margin-right: 0px; margin-bottom: 0px; =
margin-left: 0px; ">text pane.<SPAN class=3D"Apple-converted-
space">=A0 =
</SPAN>One possible cause is that I have updated to<SPAN =
class=3D"Apple-converted-space">=A0</SPAN></DIV><DIV
style=3D"margin-top: =
0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px;
">10.4.3 =
and am not sure whether the problem also occurred in<SPAN =
class=3D"Apple-converted-space">=A0</SPAN></DIV><DIV
style=3D"margin-top: =
0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px;
">10.4.2 =
but I could boot into my backup clone and check. <SPAN =
class=3D"Apple-converted-space">=A0</SPAN></DIV><DIV
style=3D"margin-top: =
0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px;
">10.4.3 =
has meant that the fans are running more often even<SPAN =
class=3D"Apple-converted-space">=A0</SPAN></DIV><DIV
style=3D"margin-top: =
0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px;
">when the =
computer is doing very little.</DIV><DIV style=3D"margin-top: 0px; =
margin-right: 0px; margin-bottom: 0px; margin-left: 0px; min-height: =
14px; "><BR></DIV><DIV style=3D"margin-top: 0px; margin-right: 0px; =
margin-bottom: 0px; margin-left: 0px; ">I've got a Dual 2Ghz G5 with =
3.5G RAM and the stock Radeon<SPAN =
class=3D"Apple-converted-space">=A0</SPAN></DIV><DIV
style=3D"margin-top: =
0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px;
">9600 Pro =
64mB RAM graphics card into a Cinema 20" display.</DIV><DIV =
style=3D"margin-top: 0px; margin-right: 0px; margin-bottom: 0px; =
margin-left: 0px; min-height: 14px; "><BR></DIV><DIV
style=3D"margin-top: =
0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; =
">Cheers</DIV><DIV style=3D"margin-top: 0px; margin-right: 0px; =
margin-bottom: 0px; margin-left: 0px; min-height: 14px; "><BR></
DIV><DIV =
style=3D"margin-top: 0px; margin-right: 0px; margin-bottom: 0px; =
margin-left: 0px; ">MGM</DIV><DIV style=3D"margin-top: 0px; =
margin-right: 0px; margin-bottom: 0px; margin-left: 0px; min-height: =
14px; "><BR></DIV><DIV style=3D"margin-top: 0px; margin-right: 0px; =
margin-bottom: 0px; margin-left: 0px; min-height: 14px; "><BR></
DIV><DIV =
style=3D"margin-top: 0px; margin-right: 0px; margin-bottom: 0px; =
margin-left: 0px; min-height: 14px; "><BR></DIV><DIV
style=3D"margin-top: =
0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; =
min-height: 14px; "><BR></DIV><DIV style=3D"margin-top: 0px; =
margin-right: 0px; margin-bottom: 0px; margin-left: 0px; min-height: =
14px; "><BR></DIV><DIV style=3D"margin-top: 0px; margin-right: 0px; =
margin-bottom: 0px; margin-left: 0px; min-height: 14px; "><BR></
DIV><DIV =
style=3D"margin-top: 0px; margin-right: 0px; margin-bottom: 0px; =
margin-left: 0px; min-height: 14px; "><BR></DIV><DIV
style=3D"margin-top: =
0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; =
min-height: 14px; "><BR></DIV><DIV style=3D"margin-top: 0px; =
margin-right: 0px; margin-bottom: 0px; margin-left: 0px; min-height: =
14px; "><BR></DIV><DIV style=3D"margin-top: 0px; margin-right: 0px; =
margin-bottom: 0px; margin-left: 0px; min-height: 14px; "><BR></DIV> =
</BLOCKQUOTE></BLOCKQUOTE></DIV><BR></DIV></DIV></DIV></
DIV><BR><BR><DIV> =
<P style=3D"margin: 0.0px 0.0px 0.0px 0.0px"><FONT
face=3D"Helvetica" =
size=3D"3" style=3D"font: 12.0px Helvetica">Martin Montgomery</
FONT></P> =
<P style=3D"margin: 0.0px 0.0px 0.0px 0.0px"><FONT
face=3D"Helvetica" =
size=3D"3" style=3D"font: 12.0px Helvetica">Director's Group</
FONT></P> =
<P style=3D"margin: 0.0px 0.0px 0.0px 0.0px"><FONT
face=3D"Helvetica" =
size=3D"3" style=3D"font: 12.0px Helvetica">MRC Dunn Human Nutrition =
Unit</FONT></P> <P style=3D"margin: 0.0px 0.0px 0.0px 0.0px"><FONT =
face=3D"Helvetica" size=3D"3" style=3D"font: 12.0px Helvetica">Hills =
Road</FONT></P> <P style=3D"margin: 0.0px 0.0px 0.0px 0.0px"><FONT =
face=3D"Helvetica" size=3D"3" style=3D"font: 12.0px =
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--Apple-Mail-1-325788267--
--__--__--
Message: 6
From: khin...@cea.fr
Subject: Re: [PyMOL] Re: macpymol beta 21 bug?
Date: Fri, 4 Nov 2005 13:08:24 +0100
To: pymol-users <pymol-users@lists.sourceforge.net>
On Nov 4, 2005, at 12:38, Martin Montgomery wrote:
Tested 99beta21 and 99beta25 on a dual 2.5 with ATI 9800 XT (256 =20
MB) with 10.4.2 and it works fine. After upgrading to 10.4.3 on =20
that machine, everything is still fine.
Also tried 99beta25 on my machine (ATI 9600 Pro - 64MB) and that =20
still has a problem. I then booted into my back up clone which is
=20
at 10.4.2 and 99beta21 and 99beta25 work just fine. So the 64MB =20
ATI cards look to be dodgy under 10.4.3 whilst the better spec ATI
=20
ones are OK. Will try and find a nVidia 64MB equipped mac for =20
comparison.
On my iMac G4 (nVidia GeForce FX 5200 with 64 MB VRAM), I have not =20
noticed any change after updating to 10.4.3. I use a self-compiled =20
PyMol 0.98.
Konrad.
--
---------------------------------------------------------------------
Konrad Hinsen
Laboratoire L=E9on Brillouin, CEA Saclay,
91191 Gif-sur-Yvette Cedex, France
Tel.: +33-1 69 08 79 25
Fax: +33-1 69 08 82 61
E-Mail: khin...@cea.fr
---------------------------------------------------------------------
--__--__--
Message: 7
From: Martin Montgomery <m...@mrc-dunn.cam.ac.uk>
Subject: Re: [PyMOL] Re: macpymol beta 21 bug?
Date: Fri, 4 Nov 2005 12:26:28 +0000
To: pymol-users <pymol-users@lists.sourceforge.net>
I've just tested a G5 imac with a GeForce FX5200 with 64MB RAM and =20
macpymol 99beta21/25 and it works fine with 10.4.3. It seems the =20
problem is limited to ATI graphics cards with less than 256 RAM. =20
nVidea cards are not affected. Will try an ATI card with 128MB RAM
=20
if I can find one here.
I have also used my powerbook which has an ATI card and has the =20
flicker problem to boot (via target mode firewire) a G5 iMac with
an =20
nVidea card and there is no problem when the powerbook system uses =20
the iMac graphics.
Cheers
MGM
On 4 Nov 2005, at 12:08, khin...@cea.fr wrote:
On Nov 4, 2005, at 12:38, Martin Montgomery wrote:
Tested 99beta21 and 99beta25 on a dual 2.5 with ATI 9800 XT (256 =20
MB) with 10.4.2 and it works fine. After upgrading to 10.4.3 on =20
that machine, everything is still fine.
Also tried 99beta25 on my machine (ATI 9600 Pro - 64MB) and that =20
still has a problem. I then booted into my back up clone which
is =20=
at 10.4.2 and 99beta21 and 99beta25 work just fine. So the 64MB =20
ATI cards look to be dodgy under 10.4.3 whilst the better spec
ATI =20=
ones are OK. Will try and find a nVidia 64MB equipped mac for =20
comparison.
On my iMac G4 (nVidia GeForce FX 5200 with 64 MB VRAM), I have not
=20
noticed any change after updating to 10.4.3. I use a self-compiled
=20
PyMol 0.98.
Konrad.
--
---------------------------------------------------------------------
Konrad Hinsen
Laboratoire L=E9on Brillouin, CEA Saclay,
91191 Gif-sur-Yvette Cedex, France
Tel.: +33-1 69 08 79 25
Fax: +33-1 69 08 82 61
E-Mail: khin...@cea.fr
---------------------------------------------------------------------
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