Hi all, could someone confirm this: I have some complexes protein+ligand and I'd like to perform rms calculation for the position of the ligand. This what I have done:
load reference.pdb select proteinreference, segi A select ligreference, segi B load compare.pdb select proteincomapre, segi A select ligcompare, segi B align proteinreference,proteincompare rms_cur ligreference,ligcompare is rms_cur the right command to calculate the rms for the ligand position? then, is the procedure "chemically" correct? thanks regards, andrea -- "La conoscenza libera il genere umano dalla superstizione" J. Watson
