Dear Nagesh,
If you upgrade to the latest version (0.99) there is an option do
display the disulfides under the show menu
J
Nagesh Chakka wrote:
Hi Jerome,
Thanks for the mail. The web address you gave is about obtaining
information about Cys involved in bond formation. In my case, I do know
which pair of Cys are involved in it and this information is also
provided in the PDB file but I am unable to display the bridge in the
PyMOL viewer.
Also I need to display the structure in a particular orientation. Can
this information be be added in my script.
Thanks
Nagesh
Jerome Pansanel wrote:
Hello,
You can find some documentation about sulfur bonds on this page:
http://www.pymolwiki.org/index.php/Process_All_Files_In_Directory
If you are not successfull by using this resource, don't hesitate to post
again.
Cheers,
Jerome Pansanel
Selon Nagesh Chakka <[email protected]>:
Hello everyone,
I am unable to display disulphide bonds using PyMOL (version 0.97). My
understanding is that PyMOL can connect Cys that are within bonding
distance. The PDB file (ID 1AG2) defines residues involved in the SSBond
formation. I also tried to use the command "bond" to connect the
residues but without any success. I am not sure if I am doing anything
wrong. Any suggestion in this regard is appreciated.
Thanks
Nagesh
Using Tomcat but need to do more? Need to support web services,
security?
Get stuff done quickly with pre-integrated technology to make your job
easier
Download IBM WebSphere Application Server v.1.0.1 based on Apache
Geronimo
http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642
_______________________________________________
PyMOL-users mailing list
[email protected]
https://lists.sourceforge.net/lists/listinfo/pymol-users
--------------------------------------------
Mail sent through IMP: http://horde.org/imp/
Using Tomcat but need to do more? Need to support web services, security?
Get stuff done quickly with pre-integrated technology to make your job easier
Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo
http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642
_______________________________________________
PyMOL-users mailing list
[email protected]
https://lists.sourceforge.net/lists/listinfo/pymol-users
--
Joel Tyndall, PhD
Lecturer
National School of Pharmacy
University of Otago
PO Box 913 Dunedin
New Zealand
Pukenga
Te Kura Taiwhanga Putaiao
Te Whare Wananga o Otago
Pouaka Poutapeta 913 Otepoti
Aotearoa
Ph / Waea +64 3 4797293
Fax / Waeawhakaahua +64 3 4797034
