Hi Magnus, Fuse takes two arguments, you've only given one: "(ret and name c15) and (protein and resi 219 and name n)". What you intended was probably:
fuse ret and name c15, protein and resi 219 and name n By the way, not any of my business, but what bacteriorhodopsin is this? Usually, the bond is between retinal and lysine 216 :) Hope it helps, Tsjerk On 1/12/07, Magnus Andersson <magnus.anders...@chembio.chalmers.se> wrote:
Hi all, I'm trying to create a bond between the residue 219 in bacteriorhodopsin (object 1 named 'protein') and the ligand retinal (object2 named 'ret') (carbon atom named C15) with the command line: fuse (ret and name c15) and (protein and resi 219 and name n) This gives error messages: 'unknown keyword or selection' and 'malformed selection' What am I doing wrong? Cheers / Magnus ------------------------------------------------------------------------- Take Surveys. Earn Cash. Influence the Future of IT Join SourceForge.net's Techsay panel and you'll get the chance to share your opinions on IT & business topics through brief surveys - and earn cash http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV _______________________________________________ PyMOL-users mailing list PyMOL-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pymol-users
-- Tsjerk A. Wassenaar, Ph.D. Junior UD (post-doc) Biomolecular NMR, Bijvoet Center Utrecht University Padualaan 8 3584 CH Utrecht The Netherlands P: +31-30-2539931 F: +31-30-2537623
