Hi, this may not be a pymol specific question, but I'm hoping to get an answer anyway. I'm trying to find a method that will allow me to use atoms/coordinates from one residue to build another residue. For example, if I have a Lys and I need a Ser, I would like to know which of the side chain atoms are equivalent between the two residues, so that I can copy the coordinates. I don't need to build atoms that are not available (like having a Ser, but wanting to build a Lys), although that would be nice too.
Can pymol do this kind of thing? Does anyone know if there are tables naming the equivalent atoms in residues? By tables I mean something as simple as this: res a CB CG CD NE etc res b CB x CG x CD x NE NZ etc Regards, Siv Hollup -- Siv Midtun Hollup PhD Student Dept. of Informatics University of Bergen, Norway [email protected] (NOTE: new email adress) - Blessed are the flexible, for they can be tied into knots. -
